Regulon of NtrC in Citrobacter koseri ATCC BAA-895

Properties
Regulator type:	Transcription factor
TF locus tag:	CKO_03144
Regulator family:	Fis
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Regulog:	NtrC - Enterobacteriales
Statistics of regulated genes:
- Genes	27
- Operons	10
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 130 sites [see more]

Member of regulog collections

By taxonomy - Enterobacteriales
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -40 Score: 6 Sequence: TGCACTAAATTGGTGCA Locus tag: CKO_03143 Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-) Locus tag: CKO_03144 Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family
	CKO_03143	ntrB	Nitrogen regulation protein NR(II) (EC 2.7.3.-)
	CKO_03144	ntrC	Nitrogen regulation protein NR(I), Fis family
Position: -202 Score: 5.9 Sequence: TGCACCAACATGGTGCT Position: -170 Score: 5.4 Sequence: AGCACTATATTGGTGCA Locus tag: CKO_03140 Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2)
	CKO_03140	glnA	Glutamine synthetase type I (EC 6.3.1.2)
Position: -151 Score: 3.5 Sequence: TGCACAAATGTTGATCA Locus tag: CKO_01526 Name: CKO_01526 Funciton: Predicted transcriptional regulator, RpiR family Locus tag: CKO_01525 Name: ddpX Funciton: D-alanyl-D-alanine dipeptidase (EC 3.4.13.-) Locus tag: CKO_01524 Name: ddpA Funciton: Dipeptide ABC transporter, substrate-binding component (TC 3.A.1.5.2) Locus tag: CKO_01523 Name: ddpB Funciton: Dipeptide ABC transporter, transmembrane component 1 (TC 3.A.1.5.2) Locus tag: CKO_01522 Name: ddpC Funciton: Dipeptide ABC transporter, transmembrane component 2 (TC 3.A.1.5.2) Locus tag: CKO_01521 Name: ddpD Funciton: Dipeptide ABC transporter, transmembrane component 3 (TC 3.A.1.5.2) Locus tag: CKO_01520 Name: ddpF Funciton: Dipeptide ABC transporter, ABC-binding component (TC 3.A.1.5.2)
	CKO_01526	CKO_01526	Predicted transcriptional regulator, RpiR family
	CKO_01525	ddpX	D-alanyl-D-alanine dipeptidase (EC 3.4.13.-)
	CKO_01524	ddpA	Dipeptide ABC transporter, substrate-binding component (TC 3.A.1.5.2)
	CKO_01523	ddpB	Dipeptide ABC transporter, transmembrane component 1 (TC 3.A.1.5.2)
	CKO_01522	ddpC	Dipeptide ABC transporter, transmembrane component 2 (TC 3.A.1.5.2)
	CKO_01521	ddpD	Dipeptide ABC transporter, transmembrane component 3 (TC 3.A.1.5.2)
	CKO_01520	ddpF	Dipeptide ABC transporter, ABC-binding component (TC 3.A.1.5.2)
Position: -147 Score: 5.3 Sequence: TGCACCGTTATAGTGCG Locus tag: CKO_02708 Name: glnK Funciton: nitrogen regulatory protein P-II Locus tag: CKO_02707 Name: amtB Funciton: Ammonium transporter
	CKO_02708	glnK	nitrogen regulatory protein P-II
	CKO_02707	amtB	Ammonium transporter
Position: -169 Score: 4.8 Sequence: AGCACCCAAACAGTGCA Position: -140 Score: 4.2 Sequence: TGCCTCTAAACGGTGCG Locus tag: CKO_02507 Name: gltI Funciton: Glutamate-aspartate ABC transporter, substrate-binding component Locus tag: CKO_02509 Name: gltJ Funciton: Glutamate-aspartate ABC transporter, transmembrane component 1 Locus tag: CKO_02510 Name: gltK Funciton: Glutamate-aspartate ABC transporter, transmembrane component 2 Locus tag: CKO_02511 Name: gltL Funciton: Glutamate-aspartate ABC transporter, ATP-binding component
	CKO_02507	gltI	Glutamate-aspartate ABC transporter, substrate-binding component
	CKO_02509	gltJ	Glutamate-aspartate ABC transporter, transmembrane component 1
	CKO_02510	gltK	Glutamate-aspartate ABC transporter, transmembrane component 2
	CKO_02511	gltL	Glutamate-aspartate ABC transporter, ATP-binding component
Position: -212 Score: 4.3 Sequence: TTAACCATCACGGTGCG Position: -183 Score: 5.8 Sequence: TGCACCATCATGGTGCG Locus tag: CKO_00478 Name: hisJ Funciton: Histidine ABC transporter, substrate-binding component Locus tag: CKO_00479 Name: hisQ Funciton: Histidine ABC transporter, transmembrane component 1 Locus tag: CKO_00480 Name: hisM Funciton: Histidine ABC transporter, transmembrane component 2 Locus tag: CKO_00481 Name: hisP Funciton: Histidine ABC transporter, ATP-binding component
	CKO_00478	hisJ	Histidine ABC transporter, substrate-binding component
	CKO_00479	hisQ	Histidine ABC transporter, transmembrane component 1
	CKO_00480	hisM	Histidine ABC transporter, transmembrane component 2
	CKO_00481	hisP	Histidine ABC transporter, ATP-binding component
Position: -172 Score: 5.1 Sequence: TGCACTAAATCAGTGCC Position: -159 Score: 5.6 Sequence: TGCCCCAAAACGGTGCA Locus tag: CKO_02311 Name: glnH Funciton: Glutamine ABC transporter, substrate-binding component Locus tag: CKO_02312 Name: glnP Funciton: Glutamine ABC transporter, transmembrane component
	CKO_02311	glnH	Glutamine ABC transporter, substrate-binding component
	CKO_02312	glnP	Glutamine ABC transporter, transmembrane component
Position: -206 Score: 4.8 Sequence: TGCGCCATTCTGGTGCA Locus tag: CKO_00955 Name: nac Funciton: Nitrogen assimilation transcriptional regulator, LysR family
	CKO_00955	nac	Nitrogen assimilation transcriptional regulator, LysR family
Position: -53 Score: 4.6 Sequence: CGCACTTTTATGGTGCG Locus tag: CKO_02252 Name: potG Funciton: Putrescine ABC transporter, ATP-binding component Locus tag: CKO_02251 Name: potH Funciton: Putrescine ABC transporter, transmembrane component 2 Locus tag: CKO_02250 Name: potI Funciton: Putrescine ABC transporter, transmembrane component 1
	CKO_02252	potG	Putrescine ABC transporter, ATP-binding component
	CKO_02251	potH	Putrescine ABC transporter, transmembrane component 2
	CKO_02250	potI	Putrescine ABC transporter, transmembrane component 1
Position: -84 Score: 4.6 Sequence: CGCACCGTTCTGGTGCG Locus tag: CKO_04486 Name: ygjG Funciton: Putrescine aminotransferase (EC 2.6.1.82)
	CKO_04486	ygjG	Putrescine aminotransferase (EC 2.6.1.82)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of NtrC in Citrobacter koseri ATCC BAA-895

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --