Regulog HxlR - Bifidobacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:
Biological process:	Hexulose metabolism
Effector:
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 5 sites [see more]

Member of regulog collections

By taxonomy - Bifidobacteriaceae
By TF family - LacI
By pathway - Hexulose metabolism

Statistics of regulated genes
Genome	Genes	Operons
Bifidobacterium longum subsp. infantis ATCC 15697
Bifidobacterium adolescentis ATCC 15703
Bifidobacterium angulatum DSM 20098	5	1
Bifidobacterium animalis subsp. lactis AD011
Bifidobacterium bifidum NCIMB 41171
Bifidobacterium breve DSM 20213
Bifidobacterium dentium Bd1	5	1
Bifidobacterium gallicum DSM 20093
Bifidobacterium longum NCC2705
Gardnerella vaginalis 409-05

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
hxlP	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	* Bifidobacterium angulatum DSM 20098 Site: position = -83 score = 5.46115 sequence = AAACGTAACCGGTAAACTAA Site: position = -96 score = 5.60836 sequence = GTTGTTAACCGATAAACGTA Site: position = -131 score = 5.48331 sequence = GTAGTTAACCGGTACACATG Gene: BIFANG_01235: Predicted hexulose permease	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	* Bifidobacterium dentium Bd1 Site: position = -97 score = 6.2838 sequence = ATAGTTAACCGGTAAACGAA Site: position = -132 score = 6.2838 sequence = GTAGTTAACCGGTAAACAAA Gene: BDP_0010: Predicted hexulose permease	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Predicted hexulose permease
usp	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_01234: Predicted sugar phosphate isomerase/epimerase	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_0011: Predicted sugar phosphate isomerase/epimerase	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Predicted sugar phosphate isomerase/epimerase
hxlK	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_01233: Predicted hexulose kinase	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_0012: Predicted hexulose kinase	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Predicted hexulose kinase
hxlA	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_01232: 3-hexulose 6-phosphate formaldehyde-lyase	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_0013: 3-hexulose 6-phosphate formaldehyde-lyase	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	3-hexulose 6-phosphate formaldehyde-lyase
hxlB	Bifidobacterium longum subsp. infantis ATCC 15697	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_01231: Predicted 6-phospho-3-hexuloisomerase	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_0014: Predicted 6-phospho-3-hexuloisomerase	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Predicted 6-phospho-3-hexuloisomerase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog HxlR - Bifidobacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --