Regulog MdcY - Comamonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Malonate metabolism
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 8 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By TF family - GntR/Others
By pathway - Malonate metabolism

Statistics of regulated genes
Genome	Genes	Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1
Delftia acidovorans SPH-1
Leptothrix cholodnii SP-6	9	2
Methylibium petroleiphilum PM1	9	2
Polaromonas naphthalenivorans CJ2
Polaromonas sp. JS666
Rhodoferax ferrireducens DSM 15236	11	2
Variovorax paradoxus S110
Verminephrobacter eiseniae EF01-2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
matP	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	* Rhodoferax ferrireducens DSM 15236 Site: position = -160 score = 3.80786 sequence = TGGTATGCAA Site: position = -95 score = 4.60648 sequence = ATGTATACAT Gene: Rfer_1840: TRAP malonate transporter, periplasmic subunit	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	TRAP malonate transporter, periplasmic subunit
matQ	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_1841: TRAP malonate transporter, small permease subunit	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	TRAP malonate transporter, small permease subunit
matM	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_1842: TRAP malonate transporter, large permease subunit	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	TRAP malonate transporter, large permease subunit
mdcA	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_1768: Malonate decarboxylase, alpha subunit	Leptothrix cholodnii SP-6 Gene: Lcho_0079: Malonate decarboxylase, alpha subunit	2 Methylibium petroleiphilum PM1 Gene: Mpe_A0794: Malonate decarboxylase, alpha subunit Gene: Mpe_A2895: Malonate decarboxylase, alpha subunit	Polaromonas naphthalenivorans CJ2 Gene: Pnap_0946: Malonate decarboxylase, alpha subunit	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_1843: Malonate decarboxylase, alpha subunit	Variovorax paradoxus S110 Gene: Vapar_5374: Malonate decarboxylase, alpha subunit	Verminephrobacter eiseniae EF01-2 Gene: Veis_2896: Malonate decarboxylase, alpha subunit	Malonate decarboxylase, alpha subunit
mdcC	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_1767: Malonate decarboxylase delta subunit, acyl-carrier protein	Leptothrix cholodnii SP-6 Gene: Lcho_0078: Malonate decarboxylase delta subunit, acyl-carrier protein	2 Methylibium petroleiphilum PM1 Gene: Mpe_A0793: Malonate decarboxylase delta subunit, acyl-carrier protein Gene: Mpe_A2894: Malonate decarboxylase delta subunit, acyl-carrier protein	Polaromonas naphthalenivorans CJ2 Gene: Pnap_0948: Malonate decarboxylase delta subunit, acyl-carrier protein	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_1844: Malonate decarboxylase delta subunit, acyl-carrier protein	Variovorax paradoxus S110 Gene: Vapar_5373: Malonate decarboxylase delta subunit, acyl-carrier protein	Verminephrobacter eiseniae EF01-2 Gene: Veis_2895: Malonate decarboxylase delta subunit, acyl-carrier protein	Malonate decarboxylase delta subunit, acyl-carrier protein
mdcD	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_1766: Malonate decarboxylase, beta subunit	Leptothrix cholodnii SP-6 Gene: Lcho_0077: Malonate decarboxylase, beta subunit	2 Methylibium petroleiphilum PM1 Gene: Mpe_A2893: Malonate decarboxylase, beta subunit Gene: Mpe_A0792: Malonate decarboxylase, beta subunit	Polaromonas naphthalenivorans CJ2 Gene: Pnap_0949: Malonate decarboxylase, beta subunit	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_1845: Malonate decarboxylase, beta subunit	Variovorax paradoxus S110 Gene: Vapar_5372: Malonate decarboxylase, beta subunit	Verminephrobacter eiseniae EF01-2 Gene: Veis_2894: Malonate decarboxylase, beta subunit	Malonate decarboxylase, beta subunit
mdcE	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_1765: Malonate decarboxylase gamma subunit	Leptothrix cholodnii SP-6 Gene: Lcho_0076: Malonate decarboxylase gamma subunit	2 Methylibium petroleiphilum PM1 Gene: Mpe_A2892: Malonate decarboxylase gamma subunit Gene: Mpe_A0791: Malonate decarboxylase gamma subunit	Polaromonas naphthalenivorans CJ2 Gene: Pnap_0950: Malonate decarboxylase gamma subunit	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_1846: Malonate decarboxylase gamma subunit	Variovorax paradoxus S110 Gene: Vapar_5371: Malonate decarboxylase gamma subunit	Verminephrobacter eiseniae EF01-2	Malonate decarboxylase gamma subunit
mdcG	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_1764: holo-ACP synthase, malonate decarboxylase-specific	Leptothrix cholodnii SP-6 Gene: Lcho_0075: holo-ACP synthase, malonate decarboxylase-specific	Methylibium petroleiphilum PM1 Gene: Mpe_A0790: holo-ACP synthase, malonate decarboxylase-specific	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_1847: holo-ACP synthase, malonate decarboxylase-specific	Variovorax paradoxus S110 Gene: Vapar_5370: holo-ACP synthase, malonate decarboxylase-specific	Verminephrobacter eiseniae EF01-2	holo-ACP synthase, malonate decarboxylase-specific
mdcB	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_1763: Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25)	Leptothrix cholodnii SP-6 Gene: Lcho_0074: Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25)	2 Methylibium petroleiphilum PM1 Gene: Mpe_A2891: Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) Gene: Mpe_A0789: Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25)	Polaromonas naphthalenivorans CJ2 Gene: Pnap_0947: Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25)	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_1848: Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25)	Variovorax paradoxus S110 Gene: Vapar_5369: Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25)	Verminephrobacter eiseniae EF01-2	Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25)
mdcH	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_1762: Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39)	Leptothrix cholodnii SP-6 Gene: Lcho_0073: Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39)	Methylibium petroleiphilum PM1 Gene: Mpe_A0788: Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39)	Polaromonas naphthalenivorans CJ2 Gene: Pnap_0952: Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39)	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_1849: Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39)	Variovorax paradoxus S110 Gene: Vapar_5368: Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39)	Verminephrobacter eiseniae EF01-2	Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39)
Aave_1513	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_1513: putative exported protein	Acidovorax sp. JS42 Gene: Ajs_1078: putative exported protein	Comamonas testosteroni KF-1 Gene: CtesDRAFT_2353: putative exported protein	Delftia acidovorans SPH-1 Gene: Daci_2765: putative exported protein	* Leptothrix cholodnii SP-6 Site: position = -61 score = 3.80008 sequence = ATGTATACGT Gene: Lcho_0080: putative exported protein	* Methylibium petroleiphilum PM1 Site: position = -56 score = 4.60648 sequence = ATGTATACAT Gene: Mpe_A2898: putative exported protein	Polaromonas naphthalenivorans CJ2 Gene: Pnap_2872: putative exported protein	Polaromonas sp. JS666 Gene: Bpro_2092: putative exported protein	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_2537: putative exported protein	Verminephrobacter eiseniae EF01-2 Gene: Veis_2753: putative exported protein	putative exported protein
mdcR	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_1770: Malonate utilization transcriptional regulator, LysR family	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1 Gene: Mpe_A2897: Malonate utilization transcriptional regulator, LysR family	Polaromonas naphthalenivorans CJ2 Gene: Pnap_0955: Malonate utilization transcriptional regulator, LysR family	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_5377: Malonate utilization transcriptional regulator, LysR family	Verminephrobacter eiseniae EF01-2	Malonate utilization transcriptional regulator, LysR family
matC	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_1769: malonate transporter	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1 Gene: Mpe_A2896: malonate transporter	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	malonate transporter

CRON 2.
mdcY	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	* Leptothrix cholodnii SP-6 Site: position = -101 score = 3.80008 sequence = ACGTATACAT Gene: Lcho_0081: Transcriptional regulator of malonate metabolism, GntR family	* Methylibium petroleiphilum PM1 Site: position = -62 score = 4.60648 sequence = ATGTATACAT Gene: Mpe_A2899: Transcriptional regulator of malonate metabolism, GntR family	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	* Rhodoferax ferrireducens DSM 15236 Site: position = -90 score = 4.60648 sequence = ATGTATACAT Site: position = -25 score = 3.80786 sequence = TTGCATACCA Gene: Rfer_1839: Transcriptional regulator of malonate metabolism, GntR family	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Transcriptional regulator of malonate metabolism, GntR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog MdcY - Comamonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --