Regulog AfrR - Rhizobiales

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	1,5-Anhydro-d-Fructose utilization
Effector:
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 19 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By TF family - LacI
By pathway - 1,5-Anhydro-d-Fructose utilization

Statistics of regulated genes
Genome	Genes	Operons
Agrobacterium tumefaciens str. C58 (Cereon)
Azorhizobium caulinodans ORS 571
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1
Brucella melitensis 16M	12	2
Mesorhizobium loti MAFF303099	14	2
Mesorhizobium sp. BNC1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42	12	1
Rhizobium leguminosarum bv. viciae 3841	12	1
Rhizobium sp. NGR234	6	2
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021	12	2
Xanthobacter autotrophicus Py2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
PF06187	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	* Brucella melitensis 16M Site: position = -223 score = 5.82807 sequence = TAATTGGAACGTTCCAAGAC Site: position = -56 score = 5.87757 sequence = CATTTGGAACGTTCTAAACT Gene: BMEI0018: Protein of unknown function DUF993	* Mesorhizobium loti MAFF303099 Site: position = -209 score = 5.65678 sequence = CTATTGGAACGTTCTAATCC Site: position = -45 score = 5.56413 sequence = TTATTGGAACGTTCCATTTA Gene: mll3044: Protein of unknown function DUF993	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	* Rhizobium sp. NGR234 Site: position = -246 score = 6.29205 sequence = TAATTGGAACGTTCCAATTT Site: position = -49 score = 6.01999 sequence = AATTTGGAACGATCTAAATT Gene: NGR_c32990: Protein of unknown function DUF993	Rhodopseudomonas palustris CGA009	* Sinorhizobium meliloti 1021 Site: position = -260 score = 6.29205 sequence = TAATTGGAACGTTCCAATTT Site: position = -56 score = 6.01999 sequence = AATTTGGAACGATCTAAATT Gene: SMc04402: Protein of unknown function DUF993	Xanthobacter autotrophicus Py2	Protein of unknown function DUF993

CRON 2.
afrR	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	* Brucella melitensis 16M Site: position = -154 score = 5.87757 sequence = AGTTTAGAACGTTCCAAATG Gene: BMEI0019: Transcriptional regulator for 1,5-Anhydro-d-Fructose utilization, LacI family	* Mesorhizobium loti MAFF303099 Site: position = -216 score = 5.56413 sequence = TAAATGGAACGTTCCAATAA Site: position = -52 score = 5.65678 sequence = GGATTAGAACGTTCCAATAG Gene: mlr3045: Transcriptional regulator for 1,5-Anhydro-d-Fructose utilization, LacI family	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	* Rhizobium etli CFN 42 Site: position = -153 score = 5.20615 sequence = GATTTAAATCGTTCCAAAAG Site: position = -57 score = 6.00122 sequence = TTTTTGGAACGTTCCAAATA Gene: RHE_CH01719: Transcriptional regulator for 1,5-Anhydro-d-Fructose utilization, LacI family	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -161 score = 5.78575 sequence = TTTTTAGATCGTTCCAAATT Site: position = -56 score = 6.18712 sequence = CAATTGGAACGTTCCAAATA Gene: RL1820: Transcriptional regulator for 1,5-Anhydro-d-Fructose utilization, LacI family	* Rhizobium sp. NGR234 Site: position = -254 score = 6.01999 sequence = AATTTAGATCGTTCCAAATT Site: position = -57 score = 6.29205 sequence = AAATTGGAACGTTCCAATTA Gene: NGR_c33000: Transcriptional regulator for 1,5-Anhydro-d-Fructose utilization, LacI family	Rhodopseudomonas palustris CGA009	* Sinorhizobium meliloti 1021 Site: position = -261 score = 6.01999 sequence = AATTTAGATCGTTCCAAATT Site: position = -57 score = 6.29205 sequence = AAATTGGAACGTTCCAATTA Gene: SMc04401: Transcriptional regulator for 1,5-Anhydro-d-Fructose utilization, LacI family	Xanthobacter autotrophicus Py2	Transcriptional regulator for 1,5-Anhydro-d-Fructose utilization, LacI family
afr	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M Gene: BMEI0020: 1,5-anhydro-D-fructose reductase EC=1.1.1.292	Mesorhizobium loti MAFF303099 Gene: mlr3046: 1,5-anhydro-D-fructose reductase EC=1.1.1.292	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234 Gene: NGR_c33010: 1,5-anhydro-D-fructose reductase EC=1.1.1.292	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMc04400: 1,5-anhydro-D-fructose reductase EC=1.1.1.292	Xanthobacter autotrophicus Py2	1,5-anhydro-D-fructose reductase EC=1.1.1.292
ydiF	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M Gene: BMEI0021: putative CoA-transferase	Mesorhizobium loti MAFF303099 Gene: mlr3047: putative CoA-transferase	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_CH01720: putative CoA-transferase	Rhizobium leguminosarum bv. viciae 3841 Gene: RL1821: putative CoA-transferase	Rhizobium sp. NGR234 Gene: NGR_c33020: putative CoA-transferase	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMc04399: putative CoA-transferase	Xanthobacter autotrophicus Py2	putative CoA-transferase
crt	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	2 Brucella melitensis 16M Gene: BMEI0023: putative enoyl-CoA hydratase Gene: BMEI0022: putative enoyl-CoA hydratase	Mesorhizobium loti MAFF303099 Gene: mlr3048: putative enoyl-CoA hydratase	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_CH01721: putative enoyl-CoA hydratase	Rhizobium leguminosarum bv. viciae 3841 Gene: RL1822: putative enoyl-CoA hydratase	Rhizobium sp. NGR234 Gene: NGR_c33030: putative enoyl-CoA hydratase	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMc04398: putative enoyl-CoA hydratase	Xanthobacter autotrophicus Py2	putative enoyl-CoA hydratase
aldh	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M Gene: BMEI0024: putative aldehyde dehydrogenase	Mesorhizobium loti MAFF303099 Gene: mlr3049: putative aldehyde dehydrogenase	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_CH01722: putative aldehyde dehydrogenase	Rhizobium leguminosarum bv. viciae 3841 Gene: RL1823: putative aldehyde dehydrogenase	Rhizobium sp. NGR234 Gene: NGR_c33040: putative aldehyde dehydrogenase	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMc04397: putative aldehyde dehydrogenase	Xanthobacter autotrophicus Py2	putative aldehyde dehydrogenase
RHE_CH01723	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099 Gene: mlr3050: Sugar ABC transporter, substrate-binding protein	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_CH01723: Sugar ABC transporter, substrate-binding protein	Rhizobium leguminosarum bv. viciae 3841 Gene: RL1824: Sugar ABC transporter, substrate-binding protein	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMc04396: Sugar ABC transporter, substrate-binding protein	Xanthobacter autotrophicus Py2	Sugar ABC transporter, substrate-binding protein
BMEII0591	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099 Gene: mlr3052: Sugar ABC transporter, inner membrane protein	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_CH01724: Sugar ABC transporter, inner membrane protein	Rhizobium leguminosarum bv. viciae 3841 Gene: RL1825: Sugar ABC transporter, inner membrane protein	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMc04395: Sugar ABC transporter, inner membrane protein	Xanthobacter autotrophicus Py2	Sugar ABC transporter, inner membrane protein
mlr6653	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099 Gene: mlr3053: Sugar ABC transporter, inner membrane protein	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_CH01725: Sugar ABC transporter, inner membrane protein	Rhizobium leguminosarum bv. viciae 3841 Gene: RL1826: Sugar ABC transporter, inner membrane protein	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMc04394: Sugar ABC transporter, inner membrane protein	Xanthobacter autotrophicus Py2	Sugar ABC transporter, inner membrane protein
blr4845	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099 Gene: mlr3054: Sugar ABC transporter, ATP-binding protein	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_CH01726: Sugar ABC transporter, ATP-binding protein	Rhizobium leguminosarum bv. viciae 3841 Gene: RL1827: Sugar ABC transporter, ATP-binding protein	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMc04393: Sugar ABC transporter, ATP-binding protein	Xanthobacter autotrophicus Py2	Sugar ABC transporter, ATP-binding protein
BMEI0025	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M Gene: BMEI0025: Glucose-methanol-choline (GMC) oxidoreductase:NAD binding site	Mesorhizobium loti MAFF303099 Gene: mlr3056: Glucose-methanol-choline (GMC) oxidoreductase:NAD binding site	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_CH01727: Glucose-methanol-choline (GMC) oxidoreductase:NAD binding site	Rhizobium leguminosarum bv. viciae 3841 Gene: RL1828: Glucose-methanol-choline (GMC) oxidoreductase:NAD binding site	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMc04392: Glucose-methanol-choline (GMC) oxidoreductase:NAD binding site	Xanthobacter autotrophicus Py2	Glucose-methanol-choline (GMC) oxidoreductase:NAD binding site
fabG	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M Gene: BMEI0026: putative oxidoreductase	Mesorhizobium loti MAFF303099 Gene: mlr3057: putative oxidoreductase	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMc04391: putative oxidoreductase	Xanthobacter autotrophicus Py2	putative oxidoreductase
BMEI0029	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	3 Brucella melitensis 16M Gene: BMEI0028: Oxidoreductase, GMC family Gene: BMEI0029: Oxidoreductase, GMC family Gene: BMEI0027: Oxidoreductase, GMC family	Mesorhizobium loti MAFF303099 Gene: mlr3058: Oxidoreductase, GMC family	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_CH01728: Oxidoreductase, GMC family	Rhizobium leguminosarum bv. viciae 3841 Gene: RL1829: Oxidoreductase, GMC family	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Oxidoreductase, GMC family
Atu0777	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099 Gene: mlr3059: hypothetical protein	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	hypothetical protein
RHE_CH01729	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_CH01729: putative oxidoreductase	Rhizobium leguminosarum bv. viciae 3841 Gene: RL1830: putative oxidoreductase	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	putative oxidoreductase
RHE_CH01730	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_CH01730: putative oxidoreductase protein	Rhizobium leguminosarum bv. viciae 3841 Gene: RL1831: putative oxidoreductase protein	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	putative oxidoreductase protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog AfrR - Rhizobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --