Regulog HrcA - Clostridia-1

Properties
Regulator type:	Transcription factor
Regulator family:	HrcA
Regulation mode:	repressor
Biological process:	Heat shock response
Effector:	Heat shock
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 20 sites [see more]

Member of regulog collections

By taxonomy - Clostridia-1
By trascription factor - HrcA
By TF family - HrcA
By effector - Heat shock
By pathway - Heat shock response

Statistics of regulated genes
Genome	Genes	Operons
Clostridium acetobutylicum ATCC 824	7	3
Clostridium beijerincki NCIMB 8052	6	2
Clostridium botulinum A str. ATCC 3502	7	3
Clostridium butyricum 5521	6	2
Clostridium kluyveri DSM 555	7	3
Clostridium novyi NT	6	2
Clostridium perfringens ATCC 13124	7	3
Clostridium tetani E88	5	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
groES	* Clostridium acetobutylicum ATCC 824 Site: position = -106 score = 7.71992 sequence = TTAGCACTCAAGATTAACGAGTGCTAA Gene: CAC2704: Heat shock protein 60 family co-chaperone GroES	* Clostridium beijerincki NCIMB 8052 Site: position = -75 score = 7.62623 sequence = TTAGCACTCGACAATGATGAGTGCTAA Gene: Cbei_0328: Heat shock protein 60 family co-chaperone GroES	* Clostridium botulinum A str. ATCC 3502 Site: position = -84 score = 8.08121 sequence = TTAGCACTCAATATTAATGAGTGCTAA Gene: CBO3299: Heat shock protein 60 family co-chaperone GroES	* Clostridium butyricum 5521 Site: position = -84 score = 7.70192 sequence = TTAGCACTCGATGATGATGAGTGCTAA Gene: CBY_3050: Heat shock protein 60 family co-chaperone GroES	* Clostridium kluyveri DSM 555 Site: position = -84 score = 7.87316 sequence = TTAGCACTCATAATTAATGAGTGCTAA Gene: CKL_0463: Heat shock protein 60 family co-chaperone GroES	* Clostridium novyi NT Site: position = -82 score = 7.90997 sequence = TTAGCACTCGATGTTATTGAGTGCTAA Gene: NT01CX_0463: Heat shock protein 60 family co-chaperone GroES	* Clostridium perfringens ATCC 13124 Site: position = -64 score = 7.86085 sequence = TTAGCACTCTATATTAATGAGTGCTAA Gene: CPF_2574: Heat shock protein 60 family co-chaperone GroES	Clostridium tetani E88	Heat shock protein 60 family co-chaperone GroES
groEL	Clostridium acetobutylicum ATCC 824 Gene: CAC2703: Heat shock protein 60 family chaperone GroEL	Clostridium beijerincki NCIMB 8052 Gene: Cbei_0329: Heat shock protein 60 family chaperone GroEL	Clostridium botulinum A str. ATCC 3502 Gene: CBO3298: Heat shock protein 60 family chaperone GroEL	Clostridium butyricum 5521 Gene: CBY_3051: Heat shock protein 60 family chaperone GroEL	Clostridium kluyveri DSM 555 Gene: CKL_0464: Heat shock protein 60 family chaperone GroEL	Clostridium novyi NT Gene: NT01CX_0462: Heat shock protein 60 family chaperone GroEL	Clostridium perfringens ATCC 13124 Gene: CPF_2573: Heat shock protein 60 family chaperone GroEL	Clostridium tetani E88 Gene: CTC02413: Heat shock protein 60 family chaperone GroEL	Heat shock protein 60 family chaperone GroEL

CRON 2.
hrcA	* Clostridium acetobutylicum ATCC 824 Site: position = -42 score = 7.56353 sequence = TTAGCACTCAAAGAGAGTGAGTGCTAA Gene: CAC1280: Heat-inducible transcription repressor HrcA	* Clostridium beijerincki NCIMB 8052 Site: position = -44 score = 7.62276 sequence = TTAGCACTCGAGGTTAATGAGTGCTAA Gene: Cbei_0828: Heat-inducible transcription repressor HrcA	* Clostridium botulinum A str. ATCC 3502 Site: position = -48 score = 7.59736 sequence = TTAGCACTCGTTGCTAGTGAGTGCTAA Gene: CBO2961: Heat-inducible transcription repressor HrcA	* Clostridium butyricum 5521 Site: position = -44 score = 7.59736 sequence = TTAGCACTCGCTGCTAATGAGTGCTAA Gene: CBY_3533: Heat-inducible transcription repressor HrcA	* Clostridium kluyveri DSM 555 Site: position = -42 score = 7.63256 sequence = TTAGCACTCAATGCTAGCGAGTGCTAA Gene: CKL_0900: Heat-inducible transcription repressor HrcA	* Clostridium novyi NT Site: position = -49 score = 7.46091 sequence = TTAGCACTCAACTAAAACGAGTGCTAA Gene: NT01CX_0059: Heat-inducible transcription repressor HrcA	* Clostridium perfringens ATCC 13124 Site: position = -43 score = 7.51997 sequence = TTAGCACTCGTTCAGAGTGAGTGCTAA Gene: CPF_2292: Heat-inducible transcription repressor HrcA	* Clostridium tetani E88 Site: position = -20 score = 7.66069 sequence = TTAGCACTCAACAAGAGTGAGTGCTAA Gene: CTC02033: Heat-inducible transcription repressor HrcA	Heat-inducible transcription repressor HrcA
grpE	Clostridium acetobutylicum ATCC 824 Gene: CAC1281: Heat shock protein GrpE	Clostridium beijerincki NCIMB 8052 Gene: Cbei_0829: Heat shock protein GrpE	Clostridium botulinum A str. ATCC 3502 Gene: CBO2960: Heat shock protein GrpE	Clostridium butyricum 5521 Gene: CBY_3532: Heat shock protein GrpE	Clostridium kluyveri DSM 555 Gene: CKL_0901: Heat shock protein GrpE	Clostridium novyi NT Gene: NT01CX_0058: Heat shock protein GrpE	Clostridium perfringens ATCC 13124 Gene: CPF_2291: Heat shock protein GrpE	Clostridium tetani E88 Gene: CTC02032: Heat shock protein GrpE	Heat shock protein GrpE
dnaK	Clostridium acetobutylicum ATCC 824 Gene: CAC1282: Chaperone protein DnaK	Clostridium beijerincki NCIMB 8052 Gene: Cbei_0830: Chaperone protein DnaK	Clostridium botulinum A str. ATCC 3502 Gene: CBO2959: Chaperone protein DnaK	Clostridium butyricum 5521 Gene: CBY_3531: Chaperone protein DnaK	Clostridium kluyveri DSM 555 Gene: CKL_0902: Chaperone protein DnaK	Clostridium novyi NT Gene: NT01CX_0057: Chaperone protein DnaK	Clostridium perfringens ATCC 13124 Gene: CPF_2290: Chaperone protein DnaK	Clostridium tetani E88 Gene: CTC02031: Chaperone protein DnaK	Chaperone protein DnaK
dnaJ	Clostridium acetobutylicum ATCC 824 Gene: CAC1283: Chaperone protein DnaJ	Clostridium beijerincki NCIMB 8052 Gene: Cbei_0831: Chaperone protein DnaJ	Clostridium botulinum A str. ATCC 3502 Gene: CBO2958: Chaperone protein DnaJ	Clostridium butyricum 5521 Gene: CBY_3530: Chaperone protein DnaJ	Clostridium kluyveri DSM 555 Gene: CKL_0903: Chaperone protein DnaJ	Clostridium novyi NT Gene: NT01CX_0056: Chaperone protein DnaJ	Clostridium perfringens ATCC 13124 Gene: CPF_2289: Chaperone protein DnaJ	Clostridium tetani E88 Gene: CTC02030: Chaperone protein DnaJ	Chaperone protein DnaJ

CRON 3.
htpG	* Clostridium acetobutylicum ATCC 824 Site: position = -116 score = 7.6544 sequence = TTAGCACTCGTTGATATAGAGTGCTAA Gene: CAC3315: Chaperone protein HtpG	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4160: Chaperone protein HtpG	* Clostridium botulinum A str. ATCC 3502 Site: position = -103 score = 6.99513 sequence = TTAGCACTCACTAGCTTAAAGTGCTAA Gene: CBO1985: Chaperone protein HtpG	Clostridium butyricum 5521 Gene: CBY_3904: Chaperone protein HtpG	* Clostridium kluyveri DSM 555 Site: position = -202 score = 7.13376 sequence = TTAGCACTCAAGTATTATAAGTGCTAA Gene: CKL_2212: Chaperone protein HtpG	Clostridium novyi NT	* Clostridium perfringens ATCC 13124 Site: position = -63 score = 7.13303 sequence = TTAGCACTCAAGTTGTTAGAGTGCTAA Gene: CPF_0417: Chaperone protein HtpG	* Clostridium tetani E88 Site: position = -71 score = 6.9392 sequence = TTAGCACTCAGCAAATTGGAGTGCTAA Gene: CTC01489: Chaperone protein HtpG	Chaperone protein HtpG

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog HrcA - Clostridia-1

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --