Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog yybP-ykoY - Pseudomonadaceae

Properties
Regulator type: RNA regulatory element
Name: yybP-ykoY
RFAM: RF00080
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Pseudomonas aeruginosa PAO1 2 2
Pseudomonas entomophila L48 1 1
Pseudomonas putida KT2440 1 1
Pseudomonas syringae pv. tomato str. DC3000 2 2
Pseudomonas fluorescens Pf-5 2 2
Pseudomonas mendocina ymp 1 1
Pseudomonas stutzeri A1501 1 1
Azotobacter vinelandii AvOP 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
COG1971
*
Pseudomonas aeruginosa PAO1

Site:
position = -176
score = 58.79
sequence = GCCGGCCTTCCTTGG...

Gene: PA2910: Integral membrane protein
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -176
score = 55.93
sequence = CGGCCCTTGTTGGGG...

Gene: PSPTO3755: Integral membrane protein
*
Pseudomonas fluorescens Pf-5

Site:
position = -175
score = 53.72
sequence = CGCGCCTCTTTGGGG...

Gene: PFL_2642: Integral membrane protein
 
Pseudomonas mendocina ymp
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
Integral membrane protein
 
CRON 2.
COG2119
*
Pseudomonas aeruginosa PAO1

Site:
position = -213
score = 23.96
sequence = GCCCCGTCCTAGGGG...

Gene: PA4629: Probable transmembrane protein
*
Pseudomonas entomophila L48

Site:
position = -208
score = 36.11
sequence = CCGCTCCGTCCTAGG...

Gene: PSEEN0905: Probable transmembrane protein
*
Pseudomonas putida KT2440

Site:
position = -229
score = 41.85
sequence = CCGCACCGTCCTAGG...

Gene: PP0760: Probable transmembrane protein
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -208
score = 43.64
sequence = CCGCTCCGTCCTAGG...

Gene: PSPTO1145: Probable transmembrane protein
*
Pseudomonas fluorescens Pf-5

Site:
position = -210
score = 44.76
sequence = GCTCCGTCCTAGGGG...

Gene: PFL_5123: Probable transmembrane protein
*
Pseudomonas mendocina ymp

Site:
position = -207
score = 36.47
sequence = CGCCCGTCCTAGGGG...

Gene: Pmen_3666: Probable transmembrane protein
*
Pseudomonas stutzeri A1501

Site:
position = -215
score = 43.58
sequence = GCCGCCGTCCTTGGG...

Gene: PST_1115: Probable transmembrane protein
*
Azotobacter vinelandii AvOP

Site:
position = -205
score = 30.88
sequence = GCGCCGTCCTGGGGG...

Gene: Avin_41250: Probable transmembrane protein
Probable transmembrane protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD