Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog SAM-IV - Mycobacteriaceae

Properties
Regulator type: RNA regulatory element
Name: SAM-IV
RFAM: RF00634
Regulation mode:
Biological process: Sulfur metabolism
Effector: S-adenosylmethionine
Phylum: Actinobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Mycobacterium tuberculosis H37Rv 3 1
Mycobacterium leprae TN
Mycobacterium marinum M 3 1
Mycobacterium avium 104 3 1
Mycobacterium sp. JLS 4 2
Mycobacterium vanbaalenii PYR-1 5 2
Mycobacterium flavescens PYR-GCK 4 2
Mycobacterium smegmatis str. MC2 155 5 2
Mycobacterium abscessus ATCC 19977 4 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
metY
*
Mycobacterium tuberculosis H37Rv

Site:
position = -155
score = 100.95
sequence = GTCATGAGCGCCAGC...

Gene: Rv3340: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
 
Mycobacterium leprae TN
*
Mycobacterium marinum M

Site:
position = -161
score = 107.18
sequence = CGGTCATGAGCGCCA...

Gene: MMAR_1185: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
*
Mycobacterium avium 104

Site:
position = -287
score = 103.85
sequence = GTCATGAGCGCCAGC...

Gene: MAV_4315: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
*
Mycobacterium sp. JLS

Site:
position = -162
score = 107.37
sequence = CGGTCATGAGTGCCA...

Gene: Mjls_1235: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
*
Mycobacterium vanbaalenii PYR-1

Site:
position = -162
score = 103.12
sequence = CGGTCATGAGTGCCA...

Gene: Mvan_1554: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
*
Mycobacterium flavescens PYR-GCK

Site:
position = -159
score = 105.18
sequence = GTCATGAGTGCCAGC...

Gene: Mflv_4875: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
*
Mycobacterium smegmatis str. MC2 155

Site:
position = -321
score = 95.92
sequence = CGGTCATGAGCGCCA...

Gene: MSMEG_1652: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
*
Mycobacterium abscessus ATCC 19977

Site:
position = -319
score = 88.67
sequence = GTCATGAGTACCAGC...

Gene: MAB_3687: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
metX
 
Mycobacterium tuberculosis H37Rv

Gene: Rv3341: Homoserine O-acetyltransferase (EC 2.3.1.31)
 
Mycobacterium leprae TN

Gene: ML0682: Homoserine O-acetyltransferase (EC 2.3.1.31)
 
Mycobacterium marinum M

Gene: MMAR_1184: Homoserine O-acetyltransferase (EC 2.3.1.31)
 
Mycobacterium avium 104

Gene: MAV_4316: Homoserine O-acetyltransferase (EC 2.3.1.31)
 
Mycobacterium sp. JLS

Gene: Mjls_1234: Homoserine O-acetyltransferase (EC 2.3.1.31)
 
Mycobacterium vanbaalenii PYR-1

Gene: Mvan_1553: Homoserine O-acetyltransferase (EC 2.3.1.31)
 
Mycobacterium flavescens PYR-GCK

Gene: Mflv_4876: Homoserine O-acetyltransferase (EC 2.3.1.31)
 
Mycobacterium smegmatis str. MC2 155

Gene: MSMEG_1651: Homoserine O-acetyltransferase (EC 2.3.1.31)
 
Mycobacterium abscessus ATCC 19977

Gene: MAB_3688: Homoserine O-acetyltransferase (EC 2.3.1.31)
Homoserine O-acetyltransferase (EC 2.3.1.31)
Rv3342
 
Mycobacterium tuberculosis H37Rv

Gene: Rv3342: Methyltransferase (EC 2.1.1.-)
 
Mycobacterium leprae TN
 
Mycobacterium marinum M

Gene: MMAR_1183: Methyltransferase (EC 2.1.1.-)
 
Mycobacterium avium 104

Gene: MAV_4317: Methyltransferase (EC 2.1.1.-)
 
Mycobacterium sp. JLS

Gene: Mjls_1233: Methyltransferase (EC 2.1.1.-)
 
Mycobacterium vanbaalenii PYR-1

Gene: Mvan_1552: Methyltransferase (EC 2.1.1.-)
 
Mycobacterium flavescens PYR-GCK

Gene: Mflv_4877: Methyltransferase (EC 2.1.1.-)
 
Mycobacterium smegmatis str. MC2 155

Gene: MSMEG_1650: Methyltransferase (EC 2.1.1.-)
 
Mycobacterium abscessus ATCC 19977

Gene: MAB_3689: Methyltransferase (EC 2.1.1.-)
Methyltransferase (EC 2.1.1.-)
 
CRON 2.
MAB_0512
 
Mycobacterium tuberculosis H37Rv
 
Mycobacterium leprae TN
 
Mycobacterium marinum M
 
Mycobacterium avium 104
 
Mycobacterium sp. JLS
 
Mycobacterium vanbaalenii PYR-1
 
Mycobacterium flavescens PYR-GCK
 
Mycobacterium smegmatis str. MC2 155
*
Mycobacterium abscessus ATCC 19977

Site:
position = -144
score = 103.22
sequence = GTCATGAGAACCAGC...

Gene: MAB_0512: Probable aminotransferase/cysteine desulfurase
Probable aminotransferase/cysteine desulfurase
 
CRON 3.
draG
 
Mycobacterium tuberculosis H37Rv
 
Mycobacterium leprae TN
 
Mycobacterium marinum M
 
Mycobacterium avium 104
 
Mycobacterium sp. JLS

Gene: Mjls_0849: Probable ADP-ribosylglycohydrolase
*2
Mycobacterium vanbaalenii PYR-1

Gene: Mvan_1100: Probable ADP-ribosylglycohydrolase

Site:
position = -143
score = 62.03
sequence = GCTTCACGAGATGCC...

Gene: Mvan_1105: Probable ADP-ribosylglycohydrolase
 
Mycobacterium flavescens PYR-GCK
*
Mycobacterium smegmatis str. MC2 155

Site:
position = -147
score = 64.67
sequence = GCTTCACGAGACGCC...

Gene: MSMEG_1272: Probable ADP-ribosylglycohydrolase
 
Mycobacterium abscessus ATCC 19977
Probable ADP-ribosylglycohydrolase
Mvan_1104
 
Mycobacterium tuberculosis H37Rv
 
Mycobacterium leprae TN
 
Mycobacterium marinum M
 
Mycobacterium avium 104
 
Mycobacterium sp. JLS
 
Mycobacterium vanbaalenii PYR-1

Gene: Mvan_1104: Hypothetical protein
 
Mycobacterium flavescens PYR-GCK
 
Mycobacterium smegmatis str. MC2 155

Gene: MSMEG_1271: Hypothetical protein
 
Mycobacterium abscessus ATCC 19977
Hypothetical protein
 
CRON 4.
Mjls_0848
 
Mycobacterium tuberculosis H37Rv
 
Mycobacterium leprae TN
 
Mycobacterium marinum M
 
Mycobacterium avium 104
*
Mycobacterium sp. JLS

Site:
position = -143
score = 45.01
sequence = AGCTCACGAGCGGAC...

Gene: Mjls_0848: Hypothetical protein
 
Mycobacterium vanbaalenii PYR-1
*
Mycobacterium flavescens PYR-GCK

Site:
position = -144
score = 48.35
sequence = CTCACGAGCGGACGA...

Gene: Mflv_5188: Hypothetical protein
 
Mycobacterium smegmatis str. MC2 155
 
Mycobacterium abscessus ATCC 19977
Hypothetical protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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