Regulog GntR - Corynebacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	repressor, activator
Biological process:	Gluconate utilization
Effector:	Gluconate
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 13 sites [see more]

Member of regulog collections

By taxonomy - Corynebacteriaceae
By TF family - GntR/Others
By effector - Gluconate
By pathway - Gluconate utilization

Statistics of regulated genes
Genome	Genes	Operons
Corynebacterium amycolatum SK46
Corynebacterium aurimucosum ATCC 700975	1	1
Corynebacterium diphtheriae NCTC 13129
Corynebacterium efficiens YS-314	9	5
Corynebacterium glutamicum ATCC 13032	11	7
Corynebacterium jeikeium K411
Corynebacterium kroppenstedtii DSM 44385
Corynebacterium urealyticum DSM 7109

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
gntR	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975 Gene: cauri_2110: Gluconate utilization transcriptional regulator GntR, GntR family	Corynebacterium diphtheriae NCTC 13129	* Corynebacterium efficiens YS-314 Site: position = -41 score = 4.03795 sequence = AATGGTAATCACATT Gene: CE2422: Gluconate utilization transcriptional regulator GntR, GntR family	2 Corynebacterium glutamicum ATCC 13032* Site: position = -61 score = 4.03795 sequence = AATGGTAATCACATT Gene: cg2783: Gluconate utilization transcriptional regulator GntR, GntR family Gene: cg1935: Gluconate utilization transcriptional regulator GntR, GntR family	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Gluconate utilization transcriptional regulator GntR, GntR family

CRON 2.
tkt	Corynebacterium amycolatum SK46 Gene: CORAM0001_0938: Transketolase (EC 2.2.1.1)	Corynebacterium aurimucosum ATCC 700975 Gene: cauri_1208: Transketolase (EC 2.2.1.1)	Corynebacterium diphtheriae NCTC 13129 Gene: DIP1302: Transketolase (EC 2.2.1.1)	* Corynebacterium efficiens YS-314 Site: position = -233 score = 4.97883 sequence = TTTGGTAATACTTTT Gene: CE1694: Transketolase (EC 2.2.1.1)	* Corynebacterium glutamicum ATCC 13032 Site: position = -217 score = 5.09527 sequence = ATTGATCACACCTTT Gene: cg1774: Transketolase (EC 2.2.1.1)	Corynebacterium jeikeium K411 Gene: jk0992: Transketolase (EC 2.2.1.1)	Corynebacterium kroppenstedtii DSM 44385 Gene: ckrop_0959: Transketolase (EC 2.2.1.1)	Corynebacterium urealyticum DSM 7109 Gene: cur_0999: Transketolase (EC 2.2.1.1)	Transketolase (EC 2.2.1.1)
tal	Corynebacterium amycolatum SK46 Gene: CORAM0001_0937: Transaldolase (EC 2.2.1.2)	Corynebacterium aurimucosum ATCC 700975 Gene: cauri_1207: Transaldolase (EC 2.2.1.2)	Corynebacterium diphtheriae NCTC 13129 Gene: DIP1303: Transaldolase (EC 2.2.1.2)	Corynebacterium efficiens YS-314 Gene: CE1695: Transaldolase (EC 2.2.1.2)	Corynebacterium glutamicum ATCC 13032 Gene: cg1776: Transaldolase (EC 2.2.1.2)	Corynebacterium jeikeium K411 Gene: jk0993: Transaldolase (EC 2.2.1.2)	Corynebacterium kroppenstedtii DSM 44385 Gene: ckrop_0960: Transaldolase (EC 2.2.1.2)	Corynebacterium urealyticum DSM 7109 Gene: cur_0998: Transaldolase (EC 2.2.1.2)	Transaldolase (EC 2.2.1.2)
zwf	Corynebacterium amycolatum SK46 Gene: CORAM0001_0933: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)	Corynebacterium aurimucosum ATCC 700975 Gene: cauri_1206: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)	Corynebacterium diphtheriae NCTC 13129 Gene: DIP1304: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)	Corynebacterium efficiens YS-314 Gene: CE1696: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)	Corynebacterium glutamicum ATCC 13032 Gene: cg1778: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)	Corynebacterium jeikeium K411 Gene: jk0994: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)	Corynebacterium kroppenstedtii DSM 44385 Gene: ckrop_0961: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)	Corynebacterium urealyticum DSM 7109 Gene: cur_0997: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)	Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
opcA	Corynebacterium amycolatum SK46 Gene: CORAM0001_0932: Glucose-6-P dehydrogenase subunit	Corynebacterium aurimucosum ATCC 700975 Gene: cauri_1205: Glucose-6-P dehydrogenase subunit	Corynebacterium diphtheriae NCTC 13129 Gene: DIP1305: Glucose-6-P dehydrogenase subunit	Corynebacterium efficiens YS-314 Gene: CE1697: Glucose-6-P dehydrogenase subunit	Corynebacterium glutamicum ATCC 13032 Gene: cg1779: Glucose-6-P dehydrogenase subunit	Corynebacterium jeikeium K411 Gene: jk0995: Glucose-6-P dehydrogenase subunit	Corynebacterium kroppenstedtii DSM 44385 Gene: ckrop_0962: Glucose-6-P dehydrogenase subunit	Corynebacterium urealyticum DSM 7109 Gene: cur_0996: Glucose-6-P dehydrogenase subunit	Glucose-6-P dehydrogenase subunit
devB	Corynebacterium amycolatum SK46 Gene: CORAM0001_0931: 6-phosphogluconolactonase (EC 3.1.1.31)	Corynebacterium aurimucosum ATCC 700975 Gene: cauri_1204: 6-phosphogluconolactonase (EC 3.1.1.31)	Corynebacterium diphtheriae NCTC 13129 Gene: DIP1306: 6-phosphogluconolactonase (EC 3.1.1.31)	Corynebacterium efficiens YS-314 Gene: CE1698: 6-phosphogluconolactonase (EC 3.1.1.31)	Corynebacterium glutamicum ATCC 13032 Gene: cg1780: 6-phosphogluconolactonase (EC 3.1.1.31)	Corynebacterium jeikeium K411 Gene: jk0996: 6-phosphogluconolactonase (EC 3.1.1.31)	Corynebacterium kroppenstedtii DSM 44385 Gene: ckrop_0963: 6-phosphogluconolactonase (EC 3.1.1.31)	Corynebacterium urealyticum DSM 7109 Gene: cur_0995: 6-phosphogluconolactonase (EC 3.1.1.31)	6-phosphogluconolactonase (EC 3.1.1.31)

CRON 3.
gntP	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975 Gene: cauri_0620: Gluconate permease	Corynebacterium diphtheriae NCTC 13129 Gene: DIP0253: Gluconate permease	* Corynebacterium efficiens YS-314 Site: position = -59 score = 4.82777 sequence = ATAGATCATACTATT Gene: CE0611: Gluconate permease	* Corynebacterium glutamicum ATCC 13032 Site: position = -50 score = 4.88841 sequence = TTTGATCATACTAAT Gene: cg3216: Gluconate permease	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Gluconate permease

CRON 4.
gnd	Corynebacterium amycolatum SK46 Gene: CORAM0001_1879: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	Corynebacterium aurimucosum ATCC 700975 Gene: cauri_1296: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	Corynebacterium diphtheriae NCTC 13129 Gene: DIP1213: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	* Corynebacterium efficiens YS-314 Site: position = -46 score = 5.12607 sequence = AATGATATTACCTTT Gene: CE1588: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	* Corynebacterium glutamicum ATCC 13032 Site: position = -41 score = 5.00485 sequence = AATGGTCACACCTTT Gene: cg1643: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	Corynebacterium jeikeium K411 Gene: jk0912: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	Corynebacterium kroppenstedtii DSM 44385 Gene: ckrop_0877: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	Corynebacterium urealyticum DSM 7109 Gene: cur_1065: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)

CRON 5.
gntK	Corynebacterium amycolatum SK46	* Corynebacterium aurimucosum ATCC 700975 Site: position = -291 score = 3.64386 sequence = GATGGTAACACCATG Gene: cauri_0619: Gluconokinase (EC 2.7.1.12)	Corynebacterium diphtheriae NCTC 13129 Gene: DIP0254: Gluconokinase (EC 2.7.1.12)	* Corynebacterium efficiens YS-314 Site: position = -135 score = 4.949 sequence = TATGATATTACCATT Gene: CE2384: Gluconokinase (EC 2.7.1.12)	* Corynebacterium glutamicum ATCC 13032 Site: position = -76 score = 4.70313 sequence = TATGATAGTACCAAT Gene: cg2732: Gluconokinase (EC 2.7.1.12)	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Gluconokinase (EC 2.7.1.12)

CRON 6.
ptsG	Corynebacterium amycolatum SK46 Gene: CORAM0001_1477: Glucose-specific PTS system, IIABC component	Corynebacterium aurimucosum ATCC 700975 Gene: cauri_2289: Glucose-specific PTS system, IIABC component	Corynebacterium diphtheriae NCTC 13129 Gene: DIP1151: Glucose-specific PTS system, IIABC component	Corynebacterium efficiens YS-314 Gene: CE1458: Glucose-specific PTS system, IIABC component	* Corynebacterium glutamicum ATCC 13032 Site: position = -326 score = 4.37784 sequence = AAAAGTATTACCTTT Gene: cg1537: Glucose-specific PTS system, IIABC component	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385 Gene: ckrop_0817: Glucose-specific PTS system, IIABC component	Corynebacterium urealyticum DSM 7109	Glucose-specific PTS system, IIABC component

CRON 7.
ptsS	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975 Gene: cauri_0403: Sucrose-specific PTS system, IIBC component	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314	* Corynebacterium glutamicum ATCC 13032 Site: position = -174 score = 3.9665 sequence = AAAGGTGACACTATT Gene: cg2925: Sucrose-specific PTS system, IIBC component	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385 Gene: ckrop_1696: Sucrose-specific PTS system, IIBC component	Corynebacterium urealyticum DSM 7109	Sucrose-specific PTS system, IIBC component

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog GntR - Corynebacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --