Statistics of regulated genes

Genome	Genes	Operons
Clostridium kluyveri DSM 555	4	1
Clostridium sp. SS2/1
Clostridium cellulolyticum H10	1	1
Clostridium phytofermentans ISDg	1	1
Clostridium tetani E88	1	1
Clostridium acetobutylicum ATCC 824	7	2
Clostridium botulinum A str. ATCC 3502	7	2
Clostridium novyi NT	6	2
Clostridium perfringens ATCC 13124	3	2
Clostridium difficile 630	2	1
Clostridium beijerincki NCIMB 8052	6	2
Clostridium sp. OhILAs	1	1
Clostridium sp. L2-50	4	1
Clostridium scindens ATCC 35704	1	1
Clostridium nexile DSM 1787	4	2
Clostridium leptum DSM 753
Clostridium hiranonis DSM 13275	2	1
Clostridium butyricum 5521	1	1
Clostridium bolteae ATCC BAA-613	1	1
Clostridium bartlettii DSM 16795

Clusters of co-Regulated Orthologous operoNs (CRONs)

Genes																					Function
CRON 1.
iunH	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	* Clostridium perfringens ATCC 13124 Site: position = -375 score = 54.8 sequence = TTTGGTAGAGGTTCG... Gene: CPF_2260: preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1)	* Clostridium difficile 630 Site: position = -143 score = 44.26 sequence = CTGTACTTGTTCGAG... Gene: CD1682: preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1)	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	* Clostridium nexile DSM 1787 Site: position = -87 score = 49.69 sequence = CTGGACTGGTTCGAA... Gene: CLONEX_00551: preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1)	Clostridium leptum DSM 753	* Clostridium hiranonis DSM 13275 Site: position = -145 score = 39.35 sequence = TGGGGCTTGTTCGAG... Gene: CLOHIR_00398: preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1)	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1)
qrtT	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124 Gene: CPF_2259: Substrate-specific component STY3230 of queuosine-regulated ECF transporter	Clostridium difficile 630 Gene: CD1683: Substrate-specific component STY3230 of queuosine-regulated ECF transporter	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	2 Clostridium nexile DSM 1787 Gene: CLONEX_00553: Substrate-specific component STY3230 of queuosine-regulated ECF transporter Gene: CLONEX_00552: Substrate-specific component STY3230 of queuosine-regulated ECF transporter	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275 Gene: CLOHIR_00399: Substrate-specific component STY3230 of queuosine-regulated ECF transporter	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	Substrate-specific component STY3230 of queuosine-regulated ECF transporter
CRON 2.
COG1924	* Clostridium kluyveri DSM 555 Site: position = -138 score = 25.86 sequence = CAAGACAGTTCGTGA... Gene: CKL_0422: Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain)	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	* Clostridium acetobutylicum ATCC 824 Site: position = -124 score = 18.4 sequence = TAAGACAGTTCGCAA... Gene: CAC3622: Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain)	* Clostridium botulinum A str. ATCC 3502 Site: position = -417 score = 23.67 sequence = TAAAGACAGTTCGTA... Gene: CBO1552: Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain)	* Clostridium novyi NT Site: position = -155 score = 23.28 sequence = TAAGACAGTTCGTAA... Gene: NT01CX_2382: Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain)	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain)
COG1775	Clostridium kluyveri DSM 555 Gene: CKL_0423: Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824 Gene: CAC3623: Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB	Clostridium botulinum A str. ATCC 3502 Gene: CBO1553: Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB	Clostridium novyi NT Gene: NT01CX_2383: Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB
queD	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1 Gene: CLOSS21_02601: Queuosine biosynthesis QueD, PTPS-I	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824 Gene: CAC3624: Queuosine biosynthesis QueD, PTPS-I	Clostridium botulinum A str. ATCC 3502 Gene: CBO1554: Queuosine biosynthesis QueD, PTPS-I	Clostridium novyi NT Gene: NT01CX_2384: Queuosine biosynthesis QueD, PTPS-I	Clostridium perfringens ATCC 13124	Clostridium difficile 630	* Clostridium beijerincki NCIMB 8052 Site: position = -207 score = 18.96 sequence = TACGGACAGTTCATT... Gene: Cbei_2538: Queuosine biosynthesis QueD, PTPS-I	Clostridium sp. OhILAs	* Clostridium sp. L2-50 Site: position = -336 score = 15.9 sequence = TGACAGTTCATTAAT... Gene: CLOL250_00654: Queuosine biosynthesis QueD, PTPS-I	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_3192: Queuosine biosynthesis QueD, PTPS-I	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795 Gene: CLOBAR_00053: Queuosine biosynthesis QueD, PTPS-I	Queuosine biosynthesis QueD, PTPS-I
queE	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1 Gene: CLOSS21_02602: Queuosine Biosynthesis QueE Radical SAM	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824 Gene: CAC3625: Queuosine Biosynthesis QueE Radical SAM	Clostridium botulinum A str. ATCC 3502 Gene: CBO1555: Queuosine Biosynthesis QueE Radical SAM	Clostridium novyi NT Gene: NT01CX_2385: Queuosine Biosynthesis QueE Radical SAM	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052 Gene: Cbei_2539: Queuosine Biosynthesis QueE Radical SAM	Clostridium sp. OhILAs	Clostridium sp. L2-50 Gene: CLOL250_00655: Queuosine Biosynthesis QueE Radical SAM	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_3193: Queuosine Biosynthesis QueE Radical SAM	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795 Gene: CLOBAR_00052: Queuosine Biosynthesis QueE Radical SAM	Queuosine Biosynthesis QueE Radical SAM
folE	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1 Gene: CLOSS21_02603: GTP cyclohydrolase I (EC 3.5.4.16) type 1	Clostridium cellulolyticum H10 Gene: Ccel_1328: GTP cyclohydrolase I (EC 3.5.4.16) type 1	Clostridium phytofermentans ISDg Gene: null: GTP cyclohydrolase I (EC 3.5.4.16) type 1	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824 Gene: CAC3626: GTP cyclohydrolase I (EC 3.5.4.16) type 1	Clostridium botulinum A str. ATCC 3502 Gene: CBO1556: GTP cyclohydrolase I (EC 3.5.4.16) type 1	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052 Gene: Cbei_2540: GTP cyclohydrolase I (EC 3.5.4.16) type 1	Clostridium sp. OhILAs	Clostridium sp. L2-50 Gene: CLOL250_00656: GTP cyclohydrolase I (EC 3.5.4.16) type 1	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_3194: GTP cyclohydrolase I (EC 3.5.4.16) type 1	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	GTP cyclohydrolase I (EC 3.5.4.16) type 1
queC	Clostridium kluyveri DSM 555 Gene: CKL_0424: Queuosine Biosynthesis QueC ATPase	Clostridium sp. SS2/1 Gene: CLOSS21_02604: Queuosine Biosynthesis QueC ATPase	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824 Gene: CAC3627: Queuosine Biosynthesis QueC ATPase	Clostridium botulinum A str. ATCC 3502 Gene: CBO1557: Queuosine Biosynthesis QueC ATPase	Clostridium novyi NT Gene: NT01CX_2386: Queuosine Biosynthesis QueC ATPase	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052 Gene: Cbei_2541: Queuosine Biosynthesis QueC ATPase	Clostridium sp. OhILAs	Clostridium sp. L2-50 Gene: CLOL250_00657: Queuosine Biosynthesis QueC ATPase	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_3195: Queuosine Biosynthesis QueC ATPase	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795 Gene: CLOBAR_00051: Queuosine Biosynthesis QueC ATPase	Queuosine Biosynthesis QueC ATPase
queF	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1 Gene: CLOSS21_02757: NADPH dependent preQ0 reductase	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052 Gene: Cbei_2542: NADPH dependent preQ0 reductase	Clostridium sp. OhILAs	Clostridium sp. L2-50 Gene: CLOL250_02871: NADPH dependent preQ0 reductase	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_3196: NADPH dependent preQ0 reductase	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795 Gene: CLOBAR_00050: NADPH dependent preQ0 reductase	NADPH dependent preQ0 reductase
queT	Clostridium kluyveri DSM 555 Gene: CKL_0425: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	Clostridium sp. SS2/1	* Clostridium cellulolyticum H10 Site: position = -124 score = 20.83 sequence = AAAAGACAGTTCGTG... Gene: Ccel_1404: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	* Clostridium phytofermentans ISDg Site: position = -55 score = 19.29 sequence = TTAAACCGTGTGTTC... Gene: null: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	* Clostridium tetani E88 Site: position = -52 score = 26.09 sequence = TATGGACAGTTCGTA... Gene: CTC02339: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	* Clostridium acetobutylicum ATCC 824 Site: position = -57 score = 24.52 sequence = ATTTAAGACAGTTCG... Gene: CAC2413: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	* Clostridium botulinum A str. ATCC 3502 Site: position = -54 score = 23.99 sequence = TAATAGACAGTTCGT... Gene: CBO3177: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	* Clostridium novyi NT Site: position = -278 score = 24.37 sequence = AAAGTAGACAGTTCG... Gene: NT01CX_0338: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	* Clostridium perfringens ATCC 13124 Site: position = -254 score = 17.82 sequence = TATATAGACAGTTCG... Gene: CPF_1749: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	Clostridium difficile 630 Gene: CD2097: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	* Clostridium beijerincki NCIMB 8052 Site: position = -272 score = 17.58 sequence = TATAGTCAGTTCGAA... Gene: Cbei_0741: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	* Clostridium sp. OhILAs Site: position = -52 score = 24.49 sequence = TTATGTCAGTTCGCA... Gene: Clos_0047: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	Clostridium sp. L2-50	* Clostridium scindens ATCC 35704 Site: position = -57 score = 22.46 sequence = ATGAATCGTGTGTTC... Gene: CLOSCI_01962: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	* Clostridium nexile DSM 1787 Site: position = -55 score = 20.94 sequence = AAAGAGTGTTCGCGA... Gene: CLONEX_03575: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	Clostridium leptum DSM 753 Gene: CLOLEP_02420: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	Clostridium hiranonis DSM 13275	* Clostridium butyricum 5521 Site: position = -395 score = 17.16 sequence = ATTATAGTCAGTTCG... Gene: CBY_1903: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	* Clostridium bolteae ATCC BAA-613 Site: position = -57 score = 19.79 sequence = GACCGGTGTGTTCGA... Gene: CLOBOL_02330: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	Clostridium bartlettii DSM 16795 Gene: CLOBAR_01974: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter

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