Regulog PhnF - Burkholderia

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	Phosphonate utilization
Effector:
Phylum:	Proteobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 15 sites [see more]

Member of regulog collections

By taxonomy - Burkholderia
By trascription factor - PhnF
By TF family - GntR/Others
By pathway - Phosphonate utilization

Statistics of regulated genes
Genome	Genes	Operons
Burkholderia pseudomallei K96243	13	3
Burkholderia mallei ATCC 23344	9	3
Burkholderia sp. 383
Burkholderia cepacia AMMD
Burkholderia vietnamiensis G4
Burkholderia glumae BGR1
Burkholderia xenovorans LB400	13	3
Burkholderia phymatum STM815	13	3

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
phnG	* Burkholderia pseudomallei K96243 Site: position = -66 score = 6.85675 sequence = TATAGACGTCTAGACGTTTAGA Gene: BPSL2857: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG	* Burkholderia mallei ATCC 23344 Site: position = -66 score = 6.85675 sequence = TATAGACGTCTAGACGTTTAGA Gene: BMA2400: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	* Burkholderia xenovorans LB400 Site: position = -68 score = 7.26526 sequence = CCTAAACGTCTAGACGTTTAGA Gene: Bxe_B2179: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG	* Burkholderia phymatum STM815 Site: position = -90 score = 6.80465 sequence = TACAAACGTCTAGACGTTTAGA Gene: Bphy_3773: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG	Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG
phnH	Burkholderia pseudomallei K96243 Gene: BPSL2856: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH	Burkholderia mallei ATCC 23344 Gene: BMA2401: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	Burkholderia xenovorans LB400 Gene: Bxe_B2180: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH	Burkholderia phymatum STM815 Gene: Bphy_3774: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH	Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH
phnI	Burkholderia pseudomallei K96243 Gene: BPSL2855: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI	Burkholderia mallei ATCC 23344 Gene: BMA2402: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	Burkholderia xenovorans LB400 Gene: Bxe_B2181: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI	Burkholderia phymatum STM815 Gene: Bphy_3775: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI	Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI
phnJ	Burkholderia pseudomallei K96243 Gene: BPSL2854: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ	Burkholderia mallei ATCC 23344 Gene: BMA2403: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	Burkholderia xenovorans LB400 Gene: Bxe_B2182: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ	Burkholderia phymatum STM815 Gene: Bphy_3776: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ	Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ
phnK	Burkholderia pseudomallei K96243 Gene: BPSL2853: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK	Burkholderia mallei ATCC 23344 Gene: BMA2404: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	Burkholderia xenovorans LB400 Gene: Bxe_B2183: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK	Burkholderia phymatum STM815 Gene: Bphy_3777: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK	Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK
phnL	Burkholderia pseudomallei K96243 Gene: BPSL2852: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL	Burkholderia mallei ATCC 23344	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	Burkholderia xenovorans LB400 Gene: Bxe_B2184: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL	Burkholderia phymatum STM815 Gene: Bphy_3778: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL	Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL
phnM	Burkholderia pseudomallei K96243 Gene: BPSL2851: Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase	Burkholderia mallei ATCC 23344 Gene: BMA2406: Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	Burkholderia xenovorans LB400 Gene: Bxe_B2185: Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase	Burkholderia phymatum STM815 Gene: Bphy_3779: Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase	Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase

CRON 2.
phnF	* Burkholderia pseudomallei K96243 Site: position = -88 score = 6.85675 sequence = TCTAAACGTCTAGACGTCTATA Gene: BPSL2858: Transcriptional regulator for phosphonate utilization, GntR family	* Burkholderia mallei ATCC 23344 Site: position = -130 score = 6.85675 sequence = TCTAAACGTCTAGACGTCTATA Gene: BMA2399: Transcriptional regulator for phosphonate utilization, GntR family	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	* Burkholderia xenovorans LB400 Site: position = -135 score = 7.26526 sequence = TCTAAACGTCTAGACGTTTAGG Gene: Bxe_B2178: Transcriptional regulator for phosphonate utilization, GntR family	* Burkholderia phymatum STM815 Site: position = -128 score = 6.80465 sequence = TCTAAACGTCTAGACGTTTGTA Gene: Bphy_3772: Transcriptional regulator for phosphonate utilization, GntR family	Transcriptional regulator for phosphonate utilization, GntR family
rcsF	Burkholderia pseudomallei K96243 Gene: BPSL2859: Protein RcsF involved in phosphonates utilization	Burkholderia mallei ATCC 23344 Gene: BMA2398: Protein RcsF involved in phosphonates utilization	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	Burkholderia xenovorans LB400 Gene: Bxe_B2177: Protein RcsF involved in phosphonates utilization	Burkholderia phymatum STM815 Gene: Bphy_3771: Protein RcsF involved in phosphonates utilization	Protein RcsF involved in phosphonates utilization
phnN	Burkholderia pseudomallei K96243 Gene: BPSL2860: Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming)	Burkholderia mallei ATCC 23344 Gene: BMA2397: Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming)	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	Burkholderia xenovorans LB400 Gene: Bxe_B2176: Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming)	Burkholderia phymatum STM815 Gene: Bphy_3770: Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming)	Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming)

CRON 3.
phnC	* Burkholderia pseudomallei K96243 Site: position = -61 score = 5.31238 sequence = GAAAAACATCTAGACGTATATA Site: position = -53 score = 5.31419 sequence = TCTAGACGTATATACGGATTCA Gene: BPSL2850: Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1)	* Burkholderia mallei ATCC 23344 Site: position = -109 score = 5.31238 sequence = GAAAAACATCTAGACGTATATA Site: position = -101 score = 5.31419 sequence = TCTAGACGTATATACGGATTCA Gene: BMA2407: Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1)	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	* Burkholderia xenovorans LB400 Site: position = -104 score = 5.43962 sequence = TATAGTCGTCTAGACGTTGCGA Gene: Bxe_B0839: Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1)	* Burkholderia phymatum STM815 Site: position = -111 score = 4.65115 sequence = TGCAAAGATATAGTCGTCTAGA Site: position = -103 score = 4.90567 sequence = TATAGTCGTCTAGATGTTGCGA Gene: Bphy_4623: Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1)	Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1)
phnD	Burkholderia pseudomallei K96243 Gene: BPSL2849: Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)	Burkholderia mallei ATCC 23344	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	Burkholderia xenovorans LB400 Gene: Bxe_B0838: Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)	Burkholderia phymatum STM815 Gene: Bphy_4622: Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)	Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)
phnE	Burkholderia pseudomallei K96243 Gene: BPSL2848: Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1)	Burkholderia mallei ATCC 23344 Gene: BMA2409: Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1)	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	Burkholderia xenovorans LB400 Gene: Bxe_B0837: Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1)	Burkholderia phymatum STM815 Gene: Bphy_4621: Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1)	Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PhnF - Burkholderia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --