Regulog RutR - Alteromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Pyrimidine utilization
Effector:	Uracil
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 19 sites [see more]

Member of regulog collections

By trascription factor - RutR
By taxonomy - Alteromonadales
By TF family - TetR
By effector - Uracil
By pathway - Pyrimidine utilization

Statistics of regulated genes
Genome	Genes	Operons
Pseudoalteromonas atlantica T6c	16	7
Alteromonas macleodii 'Deep ecotype'	13	6
Glaciecola sp. HTCC2999
Colwellia psychrerythraea 34H	13	3
Alteromonadales bacterium TW-7	9	2
Pseudoalteromonas haloplanktis TAC125
Pseudoalteromonas tunicata D2
Idiomarina baltica OS145
Idiomarina loihiensis L2TR

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes										Function

CRON 1.
omp2	* Pseudoalteromonas atlantica T6c Site: position = -112 score = 5.73278 sequence = ACCTGACCATTTGGACAAGT Gene: Patl_2225: putative TonB-dependent outer membrane transporter	* Alteromonas macleodii 'Deep ecotype' Site: position = -124 score = 5.22752 sequence = AGTTGACCAACTGGTTAAGT Gene: MADE_02502: putative TonB-dependent outer membrane transporter	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	putative TonB-dependent outer membrane transporter

CRON 2.
add2	* Pseudoalteromonas atlantica T6c Site: position = -27 score = 5.51419 sequence = GACTGACCATTTGGTCAAAT Gene: Patl_2222: Adenosine deaminase (EC 3.5.4.4)	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Adenosine deaminase (EC 3.5.4.4)
pbuT2	Pseudoalteromonas atlantica T6c Gene: Patl_2223: Xanthine/uracil permease	* Alteromonas macleodii 'Deep ecotype' Site: position = -353 score = 5.48481 sequence = AACAGACCAGTTGGTCAACA Gene: MADE_02501: Xanthine/uracil permease	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Xanthine/uracil permease

CRON 3.
udk	* Pseudoalteromonas atlantica T6c Site: position = -180 score = 5.32455 sequence = ACTTGACCATATGGTCCACA Gene: Patl_0533: Uridine kinase (EC 2.7.1.48)	* Alteromonas macleodii 'Deep ecotype' Site: position = -183 score = 4.93652 sequence = AACTGACCACTTGGAGAACT Gene: MADE_00730: Uridine kinase (EC 2.7.1.48)	Glaciecola sp. HTCC2999 Gene: GHTCC_010100007092: Uridine kinase (EC 2.7.1.48)	* Colwellia psychrerythraea 34H Site: position = -182 score = 5.06412 sequence = CTATGACCAACTGGTCAAGT Gene: CPS_1974: Uridine kinase (EC 2.7.1.48)	Alteromonadales bacterium TW-7 Gene: ATW7_01080: Uridine kinase (EC 2.7.1.48)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAb0080: Uridine kinase (EC 2.7.1.48)	Pseudoalteromonas tunicata D2 Gene: PTD2_03621: Uridine kinase (EC 2.7.1.48)	Idiomarina baltica OS145 Gene: OS145_01217: Uridine kinase (EC 2.7.1.48)	Idiomarina loihiensis L2TR Gene: IL1536: Uridine kinase (EC 2.7.1.48)	Uridine kinase (EC 2.7.1.48)
nupX	Pseudoalteromonas atlantica T6c Gene: Patl_0532: Nucleoside permease	Alteromonas macleodii 'Deep ecotype' Gene: MADE_00729: Nucleoside permease	Glaciecola sp. HTCC2999 Gene: GHTCC_010100007087: Nucleoside permease	Colwellia psychrerythraea 34H Gene: CPS_1973: Nucleoside permease	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAb0079: Nucleoside permease	Pseudoalteromonas tunicata D2 Gene: PTD2_03616: Nucleoside permease	Idiomarina baltica OS145 Gene: OS145_01212: Nucleoside permease	Idiomarina loihiensis L2TR Gene: IL1535: Nucleoside permease	Nucleoside permease

CRON 4.
cdd	Pseudoalteromonas atlantica T6c Gene: Patl_0790: Cytidine deaminase (EC 3.5.4.5)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_01844: Cytidine deaminase (EC 3.5.4.5)	Glaciecola sp. HTCC2999	* Colwellia psychrerythraea 34H Site: position = -70 score = 5.78909 sequence = ACTTGACCATATGGTCAGCA Gene: CPS_1969: Cytidine deaminase (EC 3.5.4.5)	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Cytidine deaminase (EC 3.5.4.5)
deoA	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H Gene: CPS_1970: Thymidine phosphorylase (EC 2.4.2.4)	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145 Gene: OS145_10005: Thymidine phosphorylase (EC 2.4.2.4)	Idiomarina loihiensis L2TR Gene: IL1882: Thymidine phosphorylase (EC 2.4.2.4)	Thymidine phosphorylase (EC 2.4.2.4)

CRON 5.
xdhA	* Pseudoalteromonas atlantica T6c Site: position = -91 score = 5.69836 sequence = ACCTGACCAACTGGTCTGGT Gene: Patl_2424: Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4)	* Alteromonas macleodii 'Deep ecotype' Site: position = -83 score = 5.76872 sequence = AATTGACCATTTGGTCTACT Gene: MADE_02515: Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4)	Glaciecola sp. HTCC2999	* Colwellia psychrerythraea 34H Site: position = -94 score = 3.51291 sequence = AGCTGACACTTGTGTCAACT Gene: CPS_4864: Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4)	* Alteromonadales bacterium TW-7 Site: position = -148 score = 4.9395 sequence = AGTTAACCGATCGGTCAGGC Site: position = -328 score = 5.08432 sequence = ACATATCCTTTTGGTCAGGT Gene: ATW7_02017: Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4)	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4)
xdhB	Pseudoalteromonas atlantica T6c Gene: Patl_2425: Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_02516: Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4)	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H Gene: CPS_4865: Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4)	Alteromonadales bacterium TW-7 Gene: ATW7_02012: Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4)	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4)
xdhC	Pseudoalteromonas atlantica T6c Gene: Patl_2426: XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_02517: XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase)	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H Gene: CPS_4866: XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase)	Alteromonadales bacterium TW-7 Gene: ATW7_02007: XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase)	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase)
allB	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H Gene: CPS_4867: Allantoinase (EC 3.5.2.5)	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Allantoinase (EC 3.5.2.5)
allC	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H Gene: CPS_4868: Allantoicase (EC 3.5.3.4)	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Allantoicase (EC 3.5.3.4)
pucL	Pseudoalteromonas atlantica T6c Gene: Patl_2427: Uricase (EC 1.7.3.3)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_02518: Uricase (EC 1.7.3.3)	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H Gene: CPS_4869: Uricase (EC 1.7.3.3)	Alteromonadales bacterium TW-7 Gene: ATW7_02002: Uricase (EC 1.7.3.3)	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Uricase (EC 1.7.3.3)
pucM	Pseudoalteromonas atlantica T6c Gene: Patl_2428: Hydroxyisourate hydrolase (EC 3.5.2.17)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_02519: Hydroxyisourate hydrolase (EC 3.5.2.17)	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H Gene: CPS_4870: Hydroxyisourate hydrolase (EC 3.5.2.17)	Alteromonadales bacterium TW-7 Gene: ATW7_01997: Hydroxyisourate hydrolase (EC 3.5.2.17)	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Hydroxyisourate hydrolase (EC 3.5.2.17)
allA	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H Gene: CPS_4871: Ureidoglycolate hydrolase (EC 3.5.3.19)	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Ureidoglycolate hydrolase (EC 3.5.3.19)
guaD	Pseudoalteromonas atlantica T6c Gene: Patl_2429: Guanine deaminase (EC 3.5.4.3)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_02520: Guanine deaminase (EC 3.5.4.3)	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H Gene: CPS_4872: Guanine deaminase (EC 3.5.4.3)	Alteromonadales bacterium TW-7 Gene: ATW7_01992: Guanine deaminase (EC 3.5.4.3)	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Guanine deaminase (EC 3.5.4.3)
COG3748	Pseudoalteromonas atlantica T6c Gene: Patl_2430: hypothetical protein, COG3748	Alteromonas macleodii 'Deep ecotype' Gene: MADE_02521: hypothetical protein, COG3748	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H Gene: CPS_4873: hypothetical protein, COG3748	Alteromonadales bacterium TW-7 Gene: ATW7_01987: hypothetical protein, COG3748	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	hypothetical protein, COG3748
COG0726	Pseudoalteromonas atlantica T6c Gene: Patl_2422: putative polysaccharide deacetylase family protein	Alteromonas macleodii 'Deep ecotype' Gene: MADE_02512: putative polysaccharide deacetylase family protein	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7 Gene: ATW7_01982: putative polysaccharide deacetylase family protein	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	putative polysaccharide deacetylase family protein
rutR	* Pseudoalteromonas atlantica T6c Site: position = -242 score = 5.87522 sequence = ACCAGACCAGTTGGTCAGGT Gene: Patl_2423: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	Alteromonas macleodii 'Deep ecotype' Gene: MADE_02513: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	Glaciecola sp. HTCC2999	2 Colwellia psychrerythraea 34H Gene: CPS_1965: Transcriptional regulator RutR of pyrimidine catabolism, TetR family Gene: CPS_4876: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	* Alteromonadales bacterium TW-7 Site: position = -61 score = 5.32283 sequence = AATTGACCTTTCGGTCAGTA Gene: ATW7_02067: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Transcriptional regulator RutR of pyrimidine catabolism, TetR family

CRON 6.
pbuT	* Pseudoalteromonas atlantica T6c Site: position = -98 score = 5.21399 sequence = GCTAGACTAAATGGTCAGGT Gene: Patl_2421: Xanthine/uracil permease	* Alteromonas macleodii 'Deep ecotype' Site: position = -71 score = 5.73003 sequence = AGTTGACTAATTGGTCAGTT Gene: MADE_02510: Xanthine/uracil permease	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Xanthine/uracil permease

CRON 7.
omp1	* Pseudoalteromonas atlantica T6c Site: position = -127 score = 4.29998 sequence = TTTTGACCAGTTAGTCAAAT Gene: Patl_0536: putative TonB-dependent outer membrane transporter	* Alteromonas macleodii 'Deep ecotype' Site: position = -207 score = 5.68405 sequence = ACTTGACCATGTGGTCAGGT Gene: MADE_00733: putative TonB-dependent outer membrane transporter	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H Gene: CPS_1968: putative TonB-dependent outer membrane transporter	Alteromonadales bacterium TW-7 Gene: ATW7_02752: putative TonB-dependent outer membrane transporter	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAb0340: putative TonB-dependent outer membrane transporter	Pseudoalteromonas tunicata D2 Gene: PTD2_03406: putative TonB-dependent outer membrane transporter	Idiomarina baltica OS145 Gene: OS145_04710: putative TonB-dependent outer membrane transporter	Idiomarina loihiensis L2TR Gene: IL0583: putative TonB-dependent outer membrane transporter	putative TonB-dependent outer membrane transporter

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog RutR - Alteromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --