Regulog ykkC-yxkD - Cyanobacteria

Properties
Regulator type:	RNA regulatory element
Name:	ykkC-yxkD
RFAM:	RF00442
Regulation mode:
Biological process:	Multidrug resistance
Effector:
Phylum:	Cyanobacteria

Member of regulog collections

By taxonomy - Cyanobacteria
By RNA motif - ykkC-yxkD
By pathway - Multidrug resistance

Statistics of regulated genes
Genome	Genes	Operons
Synechococcus sp. PCC 7002
Synechocystis sp. PCC 6803	6	1
Cyanothece sp. ATCC 51142
Cyanothece sp. PCC 8801
Cyanothece sp. PCC 7425	8	2
Microcystis aeruginosa NIES-843	5	1
Nostoc sp. PCC 7120
Trichodesmium erythraeum IMS101
Synechococcus elongatus PCC 7942
Prochlorococcus marinus str. MIT 9313
Synechococcus sp. JA-3-3Ab
Synechococcus sp. WH 8102	7	1
Gloeobacter violaceus PCC 7421	3	1
Thermosynechococcus elongatus BP-1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes															Function

CRON 1.
speB	Synechococcus sp. PCC 7002 Gene: SYNPCC7002_A1751: Agmatine ureohydrolase (EC 3.5.3.11)	* Synechocystis sp. PCC 6803 Site: position = -196 score = 87.03 sequence = GGGATATTGTTTCTA... Gene: sll1077: Agmatine ureohydrolase (EC 3.5.3.11)	Cyanothece sp. ATCC 51142	Cyanothece sp. PCC 8801	Cyanothece sp. PCC 7425	* Microcystis aeruginosa NIES-843 Site: position = -202 score = 83.56 sequence = GAAATTGCTTCTAGG... Gene: MAE_18840: Agmatine ureohydrolase (EC 3.5.3.11)	Nostoc sp. PCC 7120	Trichodesmium erythraeum IMS101	Synechococcus elongatus PCC 7942	Prochlorococcus marinus str. MIT 9313	Synechococcus sp. JA-3-3Ab	* Synechococcus sp. WH 8102 Site: position = -33 score = 82.89 sequence = GCGGAGAAACCTAGG... Gene: SYNW1412: Agmatine ureohydrolase (EC 3.5.3.11)	Gloeobacter violaceus PCC 7421	Thermosynechococcus elongatus BP-1	Agmatine ureohydrolase (EC 3.5.3.11)
hypA	Synechococcus sp. PCC 7002 Gene: SYNPCC7002_A1746: [NiFe] hydrogenase nickel incorporation protein HypA	Synechocystis sp. PCC 6803 Gene: sll1078: [NiFe] hydrogenase nickel incorporation protein HypA	Cyanothece sp. ATCC 51142	Cyanothece sp. PCC 8801	Cyanothece sp. PCC 7425	Microcystis aeruginosa NIES-843 Gene: MAE_18860: [NiFe] hydrogenase nickel incorporation protein HypA	Nostoc sp. PCC 7120	Trichodesmium erythraeum IMS101	Synechococcus elongatus PCC 7942	Prochlorococcus marinus str. MIT 9313	Synechococcus sp. JA-3-3Ab	Synechococcus sp. WH 8102 Gene: SYNW1413: [NiFe] hydrogenase nickel incorporation protein HypA	Gloeobacter violaceus PCC 7421	Thermosynechococcus elongatus BP-1	[NiFe] hydrogenase nickel incorporation protein HypA
hypB	Synechococcus sp. PCC 7002 Gene: SYNPCC7002_A1747: [NiFe] hydrogenase nickel incorporation-associated protein HypB	Synechocystis sp. PCC 6803 Gene: sll1079: [NiFe] hydrogenase nickel incorporation-associated protein HypB	Cyanothece sp. ATCC 51142	Cyanothece sp. PCC 8801	Cyanothece sp. PCC 7425	Microcystis aeruginosa NIES-843 Gene: MAE_18870: [NiFe] hydrogenase nickel incorporation-associated protein HypB	Nostoc sp. PCC 7120	Trichodesmium erythraeum IMS101	Synechococcus elongatus PCC 7942	Prochlorococcus marinus str. MIT 9313	Synechococcus sp. JA-3-3Ab	Synechococcus sp. WH 8102 Gene: SYNW1414: [NiFe] hydrogenase nickel incorporation-associated protein HypB	Gloeobacter violaceus PCC 7421	Thermosynechococcus elongatus BP-1	[NiFe] hydrogenase nickel incorporation-associated protein HypB
uctB	Synechococcus sp. PCC 7002 Gene: SYNPCC7002_A1748: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein	Synechocystis sp. PCC 6803 Gene: sll1080: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein	Cyanothece sp. ATCC 51142	Cyanothece sp. PCC 8801	* Cyanothece sp. PCC 7425 Site: position = -99 score = 81.49 sequence = AAAATTTAGCTTCTA... Gene: Cyan7425_3256: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein	Microcystis aeruginosa NIES-843 Gene: MAE_18880: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein	Nostoc sp. PCC 7120	Trichodesmium erythraeum IMS101	Synechococcus elongatus PCC 7942	Prochlorococcus marinus str. MIT 9313	Synechococcus sp. JA-3-3Ab	Synechococcus sp. WH 8102 Gene: SYNW1415: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein	Gloeobacter violaceus PCC 7421 Gene: gll3107: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein	Thermosynechococcus elongatus BP-1	Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein
uctP	Synechococcus sp. PCC 7002 Gene: SYNPCC7002_A1749: Urea carboxylase-related ABC transporter, permease protein	Synechocystis sp. PCC 6803 Gene: sll1081: Urea carboxylase-related ABC transporter, permease protein	Cyanothece sp. ATCC 51142	Cyanothece sp. PCC 8801	Cyanothece sp. PCC 7425 Gene: Cyan7425_3255: Urea carboxylase-related ABC transporter, permease protein	Microcystis aeruginosa NIES-843 Gene: MAE_18890: Urea carboxylase-related ABC transporter, permease protein	Nostoc sp. PCC 7120	Trichodesmium erythraeum IMS101	Synechococcus elongatus PCC 7942	Prochlorococcus marinus str. MIT 9313	Synechococcus sp. JA-3-3Ab	Synechococcus sp. WH 8102 Gene: SYNW1416: Urea carboxylase-related ABC transporter, permease protein	Gloeobacter violaceus PCC 7421 Gene: gll0173: Urea carboxylase-related ABC transporter, permease protein	Thermosynechococcus elongatus BP-1	Urea carboxylase-related ABC transporter, permease protein
uctA	Synechococcus sp. PCC 7002	Synechocystis sp. PCC 6803 Gene: sll1082: Urea carboxylase-related ABC transporter, ATPase protein	Cyanothece sp. ATCC 51142	Cyanothece sp. PCC 8801	Cyanothece sp. PCC 7425 Gene: Cyan7425_3254: Urea carboxylase-related ABC transporter, ATPase protein	Microcystis aeruginosa NIES-843 Gene: MAE_18900: Urea carboxylase-related ABC transporter, ATPase protein	Nostoc sp. PCC 7120	Trichodesmium erythraeum IMS101	Synechococcus elongatus PCC 7942	Prochlorococcus marinus str. MIT 9313	Synechococcus sp. JA-3-3Ab	Synechococcus sp. WH 8102 Gene: SYNW1417: Urea carboxylase-related ABC transporter, ATPase protein	Gloeobacter violaceus PCC 7421 Gene: gll0174: Urea carboxylase-related ABC transporter, ATPase protein	Thermosynechococcus elongatus BP-1	Urea carboxylase-related ABC transporter, ATPase protein
SYNW1418	Synechococcus sp. PCC 7002	Synechocystis sp. PCC 6803	Cyanothece sp. ATCC 51142	Cyanothece sp. PCC 8801	Cyanothece sp. PCC 7425	Microcystis aeruginosa NIES-843	Nostoc sp. PCC 7120	Trichodesmium erythraeum IMS101	Synechococcus elongatus PCC 7942	Prochlorococcus marinus str. MIT 9313	Synechococcus sp. JA-3-3Ab	Synechococcus sp. WH 8102 Gene: SYNW1418: Putative Rieske [2Fe-2S] family protein	Gloeobacter violaceus PCC 7421	Thermosynechococcus elongatus BP-1	Putative Rieske [2Fe-2S] family protein
MAE_18850	Synechococcus sp. PCC 7002	Synechocystis sp. PCC 6803	Cyanothece sp. ATCC 51142	Cyanothece sp. PCC 8801	Cyanothece sp. PCC 7425	Microcystis aeruginosa NIES-843 Gene: MAE_18850: Hypothetical protein	Nostoc sp. PCC 7120	Trichodesmium erythraeum IMS101	Synechococcus elongatus PCC 7942	Prochlorococcus marinus str. MIT 9313	Synechococcus sp. JA-3-3Ab	Synechococcus sp. WH 8102	Gloeobacter violaceus PCC 7421	Thermosynechococcus elongatus BP-1	Hypothetical protein
birA	Synechococcus sp. PCC 7002 Gene: SYNPCC7002_A0084: Biotin-protein ligase (EC 6.3.4.15)	Synechocystis sp. PCC 6803 Gene: sll1655: Biotin-protein ligase (EC 6.3.4.15)	Cyanothece sp. ATCC 51142 Gene: cce_1774: Biotin-protein ligase (EC 6.3.4.15)	Cyanothece sp. PCC 8801 Gene: PCC8801_2770: Biotin-protein ligase (EC 6.3.4.15)	Cyanothece sp. PCC 7425 Gene: Cyan7425_3253: Biotin-protein ligase (EC 6.3.4.15)	Microcystis aeruginosa NIES-843 Gene: MAE_13400: Biotin-protein ligase (EC 6.3.4.15)	Nostoc sp. PCC 7120 Gene: alr5256: Biotin-protein ligase (EC 6.3.4.15)	Trichodesmium erythraeum IMS101 Gene: Tery_3352: Biotin-protein ligase (EC 6.3.4.15)	Synechococcus elongatus PCC 7942 Gene: Synpcc7942_0345: Biotin-protein ligase (EC 6.3.4.15)	Prochlorococcus marinus str. MIT 9313 Gene: PMT1359: Biotin-protein ligase (EC 6.3.4.15)	Synechococcus sp. JA-3-3Ab Gene: CYA_2270: Biotin-protein ligase (EC 6.3.4.15)	Synechococcus sp. WH 8102 Gene: SYNW1876: Biotin-protein ligase (EC 6.3.4.15)	Gloeobacter violaceus PCC 7421 Gene: gll1338: Biotin-protein ligase (EC 6.3.4.15)	Thermosynechococcus elongatus BP-1 Gene: null: Biotin-protein ligase (EC 6.3.4.15)	Biotin-protein ligase (EC 6.3.4.15)
ucaB	Synechococcus sp. PCC 7002	Synechocystis sp. PCC 6803	Cyanothece sp. ATCC 51142	Cyanothece sp. PCC 8801	Cyanothece sp. PCC 7425 Gene: Cyan7425_3252: Allophanate hydrolase (EC 3.5.1.54)	Microcystis aeruginosa NIES-843	Nostoc sp. PCC 7120	Trichodesmium erythraeum IMS101	Synechococcus elongatus PCC 7942	Prochlorococcus marinus str. MIT 9313	Synechococcus sp. JA-3-3Ab	Synechococcus sp. WH 8102	Gloeobacter violaceus PCC 7421 Gene: glr0961: Allophanate hydrolase (EC 3.5.1.54)	Thermosynechococcus elongatus BP-1	Allophanate hydrolase (EC 3.5.1.54)

CRON 2.
amt1	Synechococcus sp. PCC 7002	Synechocystis sp. PCC 6803	Cyanothece sp. ATCC 51142	Cyanothece sp. PCC 8801	* Cyanothece sp. PCC 7425 Site: position = -216 score = 76.94 sequence = CAGGAATGGCTTCTA... Gene: Cyan7425_2306: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Microcystis aeruginosa NIES-843	Nostoc sp. PCC 7120	Trichodesmium erythraeum IMS101	Synechococcus elongatus PCC 7942	Prochlorococcus marinus str. MIT 9313	Synechococcus sp. JA-3-3Ab	Synechococcus sp. WH 8102	* Gloeobacter violaceus PCC 7421 Site: position = -177 score = 76.76 sequence = AAAAACTGGCTTCTA... Gene: gll0960: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Thermosynechococcus elongatus BP-1	Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
amt2	Synechococcus sp. PCC 7002	Synechocystis sp. PCC 6803	Cyanothece sp. ATCC 51142	Cyanothece sp. PCC 8801	Cyanothece sp. PCC 7425 Gene: Cyan7425_2305: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Microcystis aeruginosa NIES-843	Nostoc sp. PCC 7120	Trichodesmium erythraeum IMS101	Synechococcus elongatus PCC 7942	Prochlorococcus marinus str. MIT 9313	Synechococcus sp. JA-3-3Ab	Synechococcus sp. WH 8102	Gloeobacter violaceus PCC 7421 Gene: gll0959: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)	Thermosynechococcus elongatus BP-1	Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
ucaA	Synechococcus sp. PCC 7002	Synechocystis sp. PCC 6803	Cyanothece sp. ATCC 51142	Cyanothece sp. PCC 8801	Cyanothece sp. PCC 7425 Gene: Cyan7425_2304: Urea carboxylase (EC 6.3.4.6)	Microcystis aeruginosa NIES-843	Nostoc sp. PCC 7120	Trichodesmium erythraeum IMS101	Synechococcus elongatus PCC 7942	Prochlorococcus marinus str. MIT 9313	Synechococcus sp. JA-3-3Ab	Synechococcus sp. WH 8102	Gloeobacter violaceus PCC 7421 Gene: gll0958: Urea carboxylase (EC 6.3.4.6)	Thermosynechococcus elongatus BP-1	Urea carboxylase (EC 6.3.4.6)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog ykkC-yxkD - Cyanobacteria

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --