Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog yybP-ykoY - Desulfovibrionales

Properties
Regulator type: RNA regulatory element
Name: yybP-ykoY
RFAM: RF00080
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/delta
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Desulfovibrio vulgaris Hildenborough 1 1
Desulfovibrio vulgaris str. Miyazaki F 1 1
Desulfovibrio desulfuricans G20
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 1 1
Desulfovibrio piger ATCC 29098 1 1
Desulfovibrio salexigens DSM 2638
Desulfovibrio magneticus RS-1 1 1
Lawsonia intracellularis PHE/MN1-00
Desulfomicrobium baculatum DSM 4028 2 2
Desulfohalobium retbaense DSM 5692
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ykoY
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU0567: Membrane protein TerC, possibly involved in tellurium resistance
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_1240: Membrane protein TerC, possibly involved in tellurium resistance
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
*
Desulfomicrobium baculatum DSM 4028

Site:
position = -360
score = 64.78
sequence = TATCCTTTGAAGGGG...

Gene: Dbac_1946: Membrane protein TerC, possibly involved in tellurium resistance
 
Desulfohalobium retbaense DSM 5692
Membrane protein TerC, possibly involved in tellurium resistance
 
CRON 2.
COG0530
*
Desulfovibrio vulgaris Hildenborough

Site:
position = -174
score = 55.72
sequence = AGGGGAGTAGCTAGC...

Gene: DVU2617: Sodium/calcium exchanger family protein, COG0530
*
Desulfovibrio vulgaris str. Miyazaki F

Site:
position = -185
score = 48.68
sequence = CAAGGGGAGTAGCCA...

Gene: DvMF_1109: Sodium/calcium exchanger family protein, COG0530
 
Desulfovibrio desulfuricans G20
*
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Site:
position = -147
score = 55.53
sequence = CTGGCTGCTACAAGG...

Gene: Ddes_0594: Sodium/calcium exchanger family protein, COG0530
*
Desulfovibrio piger ATCC 29098

Site:
position = -173
score = 58.01
sequence = TCCGCACCTAAGGGG...

Gene: DESPIG_02522: Sodium/calcium exchanger family protein, COG0530
 
Desulfovibrio salexigens DSM 2638
*
Desulfovibrio magneticus RS-1

Site:
position = -164
score = 63.78
sequence = GCCTTCCCAAAGGGG...

Gene: DMR_44260: Sodium/calcium exchanger family protein, COG0530
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028
 
Desulfohalobium retbaense DSM 5692
Sodium/calcium exchanger family protein, COG0530
 
CRON 3.
htpX
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
*
Desulfomicrobium baculatum DSM 4028

Site:
position = -183
score = 49.89
sequence = TAAATCAAAAAGGGG...

Gene: Dbac_1612: Protease HtpX homolog
 
Desulfohalobium retbaense DSM 5692
Protease HtpX homolog
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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