Regulog Glycine - Staphylococcaceae

Properties
Regulator type:	RNA regulatory element
Name:	Glycine
RFAM:	RF00504
Regulation mode:
Biological process:	Glycine metabolism
Effector:	Glycine
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Staphylococcaceae
By RNA motif - Glycine
By effector - Glycine
By pathway - Glycine metabolism

Statistics of regulated genes
Genome	Genes	Operons
Staphylococcus aureus subsp. aureus N315	3	1
Staphylococcus capitis SK14	3	1
Staphylococcus epidermidis ATCC 12228	3	1
Staphylococcus carnosus subsp. carnosus TM300	4	1
Staphylococcus haemolyticus JCSC1435	3	1
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	3	1
Macrococcus caseolyticus JCSC5402	3	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes								Function

CRON 1.
gcvT	* Staphylococcus aureus subsp. aureus N315 Site: position = -173 score = 68.14 sequence = AGTGATCAGTATTAG... Gene: SA1367: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Staphylococcus capitis SK14 Site: position = -213 score = 44.55 sequence = ATTGATCAGTATTAG... Gene: STACA0001_1774: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Staphylococcus epidermidis ATCC 12228 Site: position = -222 score = 51.94 sequence = ATTGATCAGTATTAG... Gene: SE1222: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Staphylococcus carnosus subsp. carnosus TM300 Site: position = -214 score = 55.81 sequence = AATGATCAGTATTGG... Gene: Sca_1161: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Staphylococcus haemolyticus JCSC1435 Site: position = -191 score = 53.22 sequence = TGATCAGTATTAGAG... Gene: SH1379: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -186 score = 61.56 sequence = TGATCAGTATTAGAG... Gene: SSP1218: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Macrococcus caseolyticus JCSC5402 Site: position = -119 score = 57.89 sequence = GAAGAAGGAAATTAG... Site: position = -119 score = 57.89 sequence = GAAGAAGGAAATTAG... Gene: MCCL_1181: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
gcvP1	Staphylococcus aureus subsp. aureus N315 Gene: SA1366: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)	Staphylococcus capitis SK14 Gene: STACA0001_1773: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)	Staphylococcus epidermidis ATCC 12228 Gene: SE1221: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_1160: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)	Staphylococcus haemolyticus JCSC1435 Gene: SH1380: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP1219: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)	Macrococcus caseolyticus JCSC5402 Gene: MCCL_1180: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)	Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)
gcvP2	Staphylococcus aureus subsp. aureus N315 Gene: SA1365: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Staphylococcus capitis SK14 Gene: STACA0001_1772: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Staphylococcus epidermidis ATCC 12228 Gene: SE1220: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	2 Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_1158: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) Gene: Sca_1159: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Staphylococcus haemolyticus JCSC1435 Gene: SH1381: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP1220: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Macrococcus caseolyticus JCSC5402 Gene: MCCL_1179: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Glycine - Staphylococcaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --