Regulog TPP - Bacteroidaceae

Properties
Regulator type:	RNA regulatory element
Name:	TPP
RFAM:	RF00059
Regulation mode:
Biological process:	Thiamine biosynthesis
Effector:	Thiamine pyrophosphate
Phylum:	Bacteroidetes

Member of regulog collections

By taxonomy - Bacteroidaceae
By RNA motif - TPP
By effector - Thiamine pyrophosphate
By pathway - Thiamine biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Bacteroides cellulosilyticus DSM 14838	6	2
Bacteroides coprophilus DSM 18228	7	1
Bacteroides dorei DSM 17855	8	1
Bacteroides eggerthii DSM 20697	11	2
Bacteroides fragilis NCTC 9343	11	2
Bacteroides ovatus ATCC 8483	10	2
Bacteroides plebeius DSM 17135	2	1
Bacteroides stercoris ATCC 43183	11	2
Bacteroides thetaiotaomicron VPI-5482	10	3
Bacteroides uniformis ATCC 8492	11	2
Bacteroides vulgatus ATCC 8482	8	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
omp_thi	* Bacteroides cellulosilyticus DSM 14838 Site: position = -132 score = 52.15 sequence = GATTTCAACTAAGGG... Gene: BACCELL_00080: Predicted thiamin-specific outer membrane transporter, TonB-dependent	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	* Bacteroides eggerthii DSM 20697 Site: position = -133 score = 51.22 sequence = GATTTCAACTAAGGG... Gene: BACEGG_00708: Predicted thiamin-specific outer membrane transporter, TonB-dependent	* Bacteroides fragilis NCTC 9343 Site: position = -96 score = 55.15 sequence = ATTCACTTAGTAGGG... Gene: BF0565: Predicted thiamin-specific outer membrane transporter, TonB-dependent	* Bacteroides ovatus ATCC 8483 Site: position = -99 score = 64.53 sequence = GATTCACTGGTAGGG... Gene: BACOVA_03026: Predicted thiamin-specific outer membrane transporter, TonB-dependent	Bacteroides plebeius DSM 17135	* Bacteroides stercoris ATCC 43183 Site: position = -131 score = 56.78 sequence = TTTCAATTAAGGGGT... Gene: BACSTE_00063: Predicted thiamin-specific outer membrane transporter, TonB-dependent	* Bacteroides thetaiotaomicron VPI-5482 Site: position = -96 score = 62.38 sequence = TCACTAAGTAGGGGT... Gene: BT2390: Predicted thiamin-specific outer membrane transporter, TonB-dependent	* Bacteroides uniformis ATCC 8492 Site: position = -128 score = 51.14 sequence = TTCAACTAAGGGGTG... Gene: BACUNI_02372: Predicted thiamin-specific outer membrane transporter, TonB-dependent	Bacteroides vulgatus ATCC 8482	Predicted thiamin-specific outer membrane transporter, TonB-dependent
pnuT	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_00079: Predicted thiamin transporter PnuT	Bacteroides coprophilus DSM 18228 Gene: BACCOPRO_00668: Predicted thiamin transporter PnuT	Bacteroides dorei DSM 17855 Gene: BACDOR_01529: Predicted thiamin transporter PnuT	Bacteroides eggerthii DSM 20697 Gene: BACEGG_00707: Predicted thiamin transporter PnuT	Bacteroides fragilis NCTC 9343 Gene: BF0564: Predicted thiamin transporter PnuT	Bacteroides ovatus ATCC 8483 Gene: BACOVA_03025: Predicted thiamin transporter PnuT	Bacteroides plebeius DSM 17135 Gene: BACPLE_00927: Predicted thiamin transporter PnuT	Bacteroides stercoris ATCC 43183 Gene: BACSTE_00064: Predicted thiamin transporter PnuT	* Bacteroides thetaiotaomicron VPI-5482 Site: position = -97 score = 53.01 sequence = TCACGCAATAGGGGT... Gene: BT2396: Predicted thiamin transporter PnuT	Bacteroides uniformis ATCC 8492 Gene: BACUNI_02373: Predicted thiamin transporter PnuT	Bacteroides vulgatus ATCC 8482 Gene: BVU_3637: Predicted thiamin transporter PnuT	Predicted thiamin transporter PnuT
tnr3	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_00078: Thiamin pyrophosphokinase (EC 2.7.6.2)	Bacteroides coprophilus DSM 18228 Gene: BACCOPRO_00669: Thiamin pyrophosphokinase (EC 2.7.6.2)	Bacteroides dorei DSM 17855 Gene: BACDOR_01530: Thiamin pyrophosphokinase (EC 2.7.6.2)	Bacteroides eggerthii DSM 20697 Gene: BACEGG_00706: Thiamin pyrophosphokinase (EC 2.7.6.2)	Bacteroides fragilis NCTC 9343 Gene: BF0563: Thiamin pyrophosphokinase (EC 2.7.6.2)	Bacteroides ovatus ATCC 8483 Gene: BACOVA_03024: Thiamin pyrophosphokinase (EC 2.7.6.2)	Bacteroides plebeius DSM 17135 Gene: BACPLE_00925: Thiamin pyrophosphokinase (EC 2.7.6.2)	Bacteroides stercoris ATCC 43183 Gene: BACSTE_00065: Thiamin pyrophosphokinase (EC 2.7.6.2)	Bacteroides thetaiotaomicron VPI-5482 Gene: BT2397: Thiamin pyrophosphokinase (EC 2.7.6.2)	Bacteroides uniformis ATCC 8492 Gene: BACUNI_02374: Thiamin pyrophosphokinase (EC 2.7.6.2)	Bacteroides vulgatus ATCC 8482 Gene: BVU_3636: Thiamin pyrophosphokinase (EC 2.7.6.2)	Thiamin pyrophosphokinase (EC 2.7.6.2)

CRON 2.
thiS	Bacteroides cellulosilyticus DSM 14838	* Bacteroides coprophilus DSM 18228 Site: position = -165 score = 64.28 sequence = AAGTAAAACAAAGGG... Gene: BACCOPRO_01563: Sulfur carrier protein ThiS	* Bacteroides dorei DSM 17855 Site: position = -169 score = 68.95 sequence = TCGTAAAACAAAGGG... Gene: BACDOR_02485: Sulfur carrier protein ThiS	* Bacteroides eggerthii DSM 20697 Site: position = -160 score = 60.36 sequence = CGTAAAGACAAAGGG... Gene: BACEGG_02630: Sulfur carrier protein ThiS	* Bacteroides fragilis NCTC 9343 Site: position = -162 score = 68.68 sequence = TAAAGACAAAGGGGT... Gene: BF2557: Sulfur carrier protein ThiS	* Bacteroides ovatus ATCC 8483 Site: position = -80 score = 66.07 sequence = CGTAAAGACAAAGGG... Gene: BACOVA_02361: Sulfur carrier protein ThiS	* Bacteroides plebeius DSM 17135 Site: position = -156 score = 68.64 sequence = AAAGTAAACAAAGGG... Gene: BACPLE_03488: Sulfur carrier protein ThiS	* Bacteroides stercoris ATCC 43183 Site: position = -158 score = 59.72 sequence = CGTAAAGACAAAGGG... Gene: BACSTE_01376: Sulfur carrier protein ThiS	* Bacteroides thetaiotaomicron VPI-5482 Site: position = -158 score = 62.85 sequence = CGTAAAGACAAAGGG... Gene: BT0653: Sulfur carrier protein ThiS	* Bacteroides uniformis ATCC 8492 Site: position = -147 score = 59.92 sequence = TAAAGACAAAGGGGT... Gene: BACUNI_00698: Sulfur carrier protein ThiS	* Bacteroides vulgatus ATCC 8482 Site: position = -164 score = 68.95 sequence = GTAAAACAAAGGGGT... Gene: BVU_3540: Sulfur carrier protein ThiS	Sulfur carrier protein ThiS
thiE	* Bacteroides cellulosilyticus DSM 14838 Site: position = -155 score = 66.86 sequence = TCGGCAGAAAAGGGG... Gene: BACCELL_01110: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Bacteroides coprophilus DSM 18228 Gene: BACCOPRO_01562: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Bacteroides dorei DSM 17855 Gene: BACDOR_02484: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Bacteroides eggerthii DSM 20697 Gene: BACEGG_02629: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Bacteroides fragilis NCTC 9343 Gene: BF2558: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Bacteroides ovatus ATCC 8483 Gene: BACOVA_02360: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Bacteroides plebeius DSM 17135 Gene: BACPLE_03487: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Bacteroides stercoris ATCC 43183 Gene: BACSTE_01375: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Bacteroides thetaiotaomicron VPI-5482 Gene: BT0652: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Bacteroides uniformis ATCC 8492 Gene: BACUNI_00699: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Bacteroides vulgatus ATCC 8482 Gene: BVU_3541: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
thiG	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228 Gene: BACCOPRO_01561: Thiazole synthase	Bacteroides dorei DSM 17855 Gene: BACDOR_02483: Thiazole synthase	Bacteroides eggerthii DSM 20697 Gene: BACEGG_02628: Thiazole synthase	Bacteroides fragilis NCTC 9343 Gene: BF2559: Thiazole synthase	Bacteroides ovatus ATCC 8483 Gene: BACOVA_02359: Thiazole synthase	Bacteroides plebeius DSM 17135 Gene: BACPLE_03485: Thiazole synthase	Bacteroides stercoris ATCC 43183 Gene: BACSTE_01374: Thiazole synthase	Bacteroides thetaiotaomicron VPI-5482 Gene: BT0651: Thiazole synthase	Bacteroides uniformis ATCC 8492 Gene: BACUNI_00700: Thiazole synthase	Bacteroides vulgatus ATCC 8482 Gene: BVU_3542: Thiazole synthase	Thiazole synthase
thiC	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_01109: Phosphomethylpyrimidine synthase	Bacteroides coprophilus DSM 18228 Gene: BACCOPRO_01560: Phosphomethylpyrimidine synthase	Bacteroides dorei DSM 17855 Gene: BACDOR_02482: Phosphomethylpyrimidine synthase	Bacteroides eggerthii DSM 20697 Gene: BACEGG_02627: Phosphomethylpyrimidine synthase	Bacteroides fragilis NCTC 9343 Gene: BF2560: Phosphomethylpyrimidine synthase	Bacteroides ovatus ATCC 8483 Gene: BACOVA_02358: Phosphomethylpyrimidine synthase	Bacteroides plebeius DSM 17135 Gene: BACPLE_03484: Phosphomethylpyrimidine synthase	Bacteroides stercoris ATCC 43183 Gene: BACSTE_01373: Phosphomethylpyrimidine synthase	Bacteroides thetaiotaomicron VPI-5482 Gene: BT0650: Phosphomethylpyrimidine synthase	Bacteroides uniformis ATCC 8492 Gene: BACUNI_00701: Phosphomethylpyrimidine synthase	Bacteroides vulgatus ATCC 8482 Gene: BVU_3543: Phosphomethylpyrimidine synthase	Phosphomethylpyrimidine synthase
thiH	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228 Gene: BACCOPRO_01559: 2-iminoacetate synthase (EC 1.3.99.n2)	Bacteroides dorei DSM 17855 Gene: BACDOR_02479: 2-iminoacetate synthase (EC 1.3.99.n2)	Bacteroides eggerthii DSM 20697 Gene: BACEGG_02626: 2-iminoacetate synthase (EC 1.3.99.n2)	Bacteroides fragilis NCTC 9343 Gene: BF2562: 2-iminoacetate synthase (EC 1.3.99.n2)	Bacteroides ovatus ATCC 8483 Gene: BACOVA_02357: 2-iminoacetate synthase (EC 1.3.99.n2)	Bacteroides plebeius DSM 17135 Gene: BACPLE_03483: 2-iminoacetate synthase (EC 1.3.99.n2)	Bacteroides stercoris ATCC 43183 Gene: BACSTE_01372: 2-iminoacetate synthase (EC 1.3.99.n2)	Bacteroides thetaiotaomicron VPI-5482 Gene: BT0649: 2-iminoacetate synthase (EC 1.3.99.n2)	Bacteroides uniformis ATCC 8492 Gene: BACUNI_00702: 2-iminoacetate synthase (EC 1.3.99.n2)	Bacteroides vulgatus ATCC 8482 Gene: BVU_3546: 2-iminoacetate synthase (EC 1.3.99.n2)	2-iminoacetate synthase (EC 1.3.99.n2)
thiF	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228 Gene: BACCOPRO_01558: Sulfur carrier protein adenylyltransferase ThiF	Bacteroides dorei DSM 17855 Gene: BACDOR_02478: Sulfur carrier protein adenylyltransferase ThiF	Bacteroides eggerthii DSM 20697 Gene: BACEGG_02625: Sulfur carrier protein adenylyltransferase ThiF	Bacteroides fragilis NCTC 9343 Gene: BF2563: Sulfur carrier protein adenylyltransferase ThiF	Bacteroides ovatus ATCC 8483 Gene: BACOVA_02356: Sulfur carrier protein adenylyltransferase ThiF	Bacteroides plebeius DSM 17135 Gene: BACPLE_03482: Sulfur carrier protein adenylyltransferase ThiF	Bacteroides stercoris ATCC 43183 Gene: BACSTE_01371: Sulfur carrier protein adenylyltransferase ThiF	Bacteroides thetaiotaomicron VPI-5482 Gene: BT0648: Sulfur carrier protein adenylyltransferase ThiF	Bacteroides uniformis ATCC 8492 Gene: BACUNI_00703: Sulfur carrier protein adenylyltransferase ThiF	Bacteroides vulgatus ATCC 8482 Gene: BVU_3547: Sulfur carrier protein adenylyltransferase ThiF	Sulfur carrier protein adenylyltransferase ThiF
thiE1	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_04459: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Bacteroides coprophilus DSM 18228 Gene: BACCOPRO_01557: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Bacteroides dorei DSM 17855 Gene: BACDOR_02474: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Bacteroides eggerthii DSM 20697 Gene: BACEGG_02624: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Bacteroides fragilis NCTC 9343 Gene: BF2564: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Bacteroides ovatus ATCC 8483 Gene: BACOVA_02355: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Bacteroides plebeius DSM 17135 Gene: BACPLE_03438: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Bacteroides stercoris ATCC 43183 Gene: BACSTE_01370: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Bacteroides thetaiotaomicron VPI-5482 Gene: BT0647: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	2 Bacteroides uniformis ATCC 8492 Gene: BACUNI_00704: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Gene: BACUNI_02327: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Bacteroides vulgatus ATCC 8482 Gene: BVU_3550: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
thiD	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697 Gene: BACEGG_02623: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Bacteroides fragilis NCTC 9343 Gene: BF2353: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Bacteroides ovatus ATCC 8483 Gene: BACOVA_02530: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183 Gene: BACSTE_01369: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Bacteroides thetaiotaomicron VPI-5482 Gene: BT0790: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Bacteroides uniformis ATCC 8492 Gene: BACUNI_00705: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Bacteroides vulgatus ATCC 8482	Phosphomethylpyrimidine kinase (EC 2.7.4.7)
BACCOPRO_03118	Bacteroides cellulosilyticus DSM 14838	Bacteroides coprophilus DSM 18228 Gene: BACCOPRO_03118: hypothetical protein	Bacteroides dorei DSM 17855 Gene: BACDOR_02481: hypothetical protein	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343 Gene: BF2561: hypothetical protein	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135 Gene: BACPLE_02008: hypothetical protein	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482 Gene: BT4505: hypothetical protein	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482 Gene: BVU_3544: hypothetical protein	hypothetical protein
BACCELL_04312	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_04312: Putative iron-sulfur flavoprotein	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855 Gene: BACDOR_02480: Putative iron-sulfur flavoprotein	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482	Bacteroides uniformis ATCC 8492 Gene: BACUNI_02197: Putative iron-sulfur flavoprotein	Bacteroides vulgatus ATCC 8482 Gene: BVU_3545: Putative iron-sulfur flavoprotein	Putative iron-sulfur flavoprotein
thi4	Bacteroides cellulosilyticus DSM 14838 Gene: BACCELL_01108: Thiazole synthase Thi4	Bacteroides coprophilus DSM 18228	Bacteroides dorei DSM 17855	Bacteroides eggerthii DSM 20697	Bacteroides fragilis NCTC 9343	Bacteroides ovatus ATCC 8483	Bacteroides plebeius DSM 17135	Bacteroides stercoris ATCC 43183	Bacteroides thetaiotaomicron VPI-5482	Bacteroides uniformis ATCC 8492	Bacteroides vulgatus ATCC 8482	Thiazole synthase Thi4

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog TPP - Bacteroidaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --