Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of PdhR regulog to Shewanella violacea DSS12

Reference regulog properties
Source regulog: PdhR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Pyruvate metabolism
Effector: Pyruvate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella violacea DSS12
Orthologous TF(s) SVI_0263
Regulated genes 3
Built upon 109 sites [see more]
Predicted regulatory interactions in Shewanella violacea DSS12
Locus tag Position Score Sequence
Position: -39
Score: 6.4
Sequence: AATTGGTAAGACCAATT
Locus tag: SVI_0263
SVI_0263 -39 6.4 AATTGGTAAGACCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pdhR
Ortholog function: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family
Shewanella oneidensis MR-1 SO_0423 -175 4.5 TAATGGTCTGACCCCTT
-38 6.4 AATTGGTAAGACCAATT
Shewanella putrefaciens CN-32 Sputcn32_3418 -194 4.4 AAATGGTCTGACCCCAT
-38 6.4 AATTGGTAAGACCAATT
Shewanella sp W3-18-1 Sputw3181_0525 -194 4.4 AAATGGTCTGACCCCAT
-38 6.4 AATTGGTAAGACCAATT
Shewanella sp ANA-3 Shewana3_0425 -38 6.4 AATTGGTAAGACCAATT
Shewanella sp MR-4 Shewmr4_0427 -175 4.4 AAATGGTCTGACCCCAT
-38 6.4 AATTGGTAAGACCAATT
Shewanella sp MR-7 Shewmr7_3600 -175 4.4 AAATGGTCTGACCCCAT
-38 6.4 AATTGGTAAGACCAATT
Shewanella baltica OS155 Sbal_3914 -175 4.4 AAATGGTCTGACCCCAT
-38 6.4 AATTGGTAAGACCAATT
Shewanella denitrificans OS217 Sden_3384 -185 4.8 AAATGGTCTGACCCCTT
-38 6.4 AATTGGTAAGACCAATT
Shewanella frigidimarina NCIMB 400 Sfri_3778 -186 4.8 AAATGGTCTGACCCCTT
-49 6.4 AATTGGTAAGACCAATT
Shewanella amazonensis SB2B Sama_0374 -152 4.8 AATTGGTCTGACCCCAT
-39 6.4 AATTGGTAAGACCAATT
Shewanella loihica PV-4 Shew_3432 -39 6.4 AATTGGTAAGACCAATT
Shewanella pealeana ATCC 700345 Spea_0418 -158 4.2 CATTGGTCAGACCCCAT
-39 6.4 AATTGGTAAGACCAATT
Shewanella halifaxensis HAW-EB4 Shal_0475 -157 4.4 CATTGGTCTGACCCCTA
-39 6.4 AATTGGTAAGACCAATT
Shewanella piezotolerans WP3 swp_4753 -158 4.2 CATTGGTCTGACCCCAT
-39 6.4 AATTGGTAAGACCAATT
Shewanella sediminis HAW-EB3 Ssed_0430 -158 4.5 TAATGGTCAGACCCCTT
-39 6.4 AATTGGTAAGACCAATT
Shewanella woodyi ATCC 51908 Swoo_0318 -159 4.3 TAATGGTCTGACCGCTA
-39 6.4 AATTGGTAAGACCAATT
Position: -231
Score: 5.8
Sequence: CATTGGTATGACCAATT
Locus tag: SVI_3161
SVI_3161 -231 5.8 CATTGGTATGACCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: oadG
Ortholog function: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
Shewanella putrefaciens CN-32 Sputcn32_1029 -246 5.6 ACATGGTAAGACCAATT
Shewanella sp W3-18-1 Sputw3181_3136 -246 5.6 ACATGGTAAGACCAATT
Shewanella sp ANA-3 Shewana3_3166 -111 6.4 AATTGGTCTTACCAATT
Shewanella sp MR-4 Shewmr4_2987 -79 6.4 AATTGGTCTTACCAATT
Shewanella sp MR-7 Shewmr7_3069 -110 6.4 AATTGGTCTTACCAATT
Shewanella baltica OS155 Sbal_1024 -251 6.1 TATTGGTAAGACCAATT
Shewanella frigidimarina NCIMB 400 Sfri_1065 -299 5.7 TTTTGGTAAGACCAATT
Shewanella amazonensis SB2B Sama_1051 -169 6.1 TATTGGTAAGACCAATT
Shewanella loihica PV-4 Shew_1219 -202 6 ATTTGGTAAGACCAATT
Shewanella pealeana ATCC 700345 Spea_1198 -195 5.2 TTATGGTATGACCAATT
Shewanella halifaxensis HAW-EB4 Shal_1235 -196 4.7 TTATGGTACGACCAATT
Shewanella piezotolerans WP3 swp_1378 -258 6.1 TATTGGTATGACCAATT
Shewanella sediminis HAW-EB3 Ssed_1320 -148 6.1 TATTGGTATGACCAATT
Shewanella woodyi ATCC 51908 Swoo_3337 -243 5.7 TTTTGGTATGACCAATT
Position: -143
Score: 6.3
Sequence: AATTGGTAATACCAATT
Locus tag: SVI_3730
SVI_3730 -143 6.3 AATTGGTAATACCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: deaD
Ortholog function: Cold-shock DEAD-box protein A
Shewanella pealeana ATCC 700345 Spea_0566 -142 6.3 AATTGGTATTACCAATT
Shewanella halifaxensis HAW-EB4 Shal_0628 -142 6 GATTGGTATTACCAATT
Shewanella piezotolerans WP3 swp_4551 -141 5.9 AAATGGTAATACCAATT
Shewanella sediminis HAW-EB3 Ssed_4029 -141 6.3 AATTGGTAATACCAATT
Shewanella woodyi ATCC 51908 Swoo_0636 -143 6.3 AATTGGTAATACCAATT
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