Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of ArgR regulog to Shewanella violacea DSS12

Reference regulog properties
Source regulog: ArgR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: ArgR
Regulation mode: repressor (activator)
Biological process: Arginine degradation; Arginine biosynthesis
Effector: Arginine
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella violacea DSS12
Orthologous TF(s) SVI_0783
Regulated genes 20
Built upon 502 sites [see more]
Predicted regulatory interactions in Shewanella violacea DSS12
Locus tag Position Score Sequence
Position: -125
Score: 4.9
Sequence: CTTGAATTTTTATTCAAG
Locus tag: SVI_0783
SVI_0783 -125 4.9 CTTGAATTTTTATTCAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: argR
Ortholog function: Arginine metabolism transcriptional regulator ArgR
Shewanella oneidensis MR-1 SO_0769 -93 5.5 ATTGCATTTTTATTCAGT
Shewanella putrefaciens CN-32 Sputcn32_3220 -96 5.5 AGTGAATTTTTATTCAAC
Shewanella sp W3-18-1 Sputw3181_0721 -96 5.5 AGTGAATTTTTATTCAAC
Shewanella sp ANA-3 Shewana3_3510 -93 5.5 ATTGCATTTTTATTCAGT
Shewanella sp MR-4 Shewmr4_3340 -93 5.5 ATTGCATTTTTATTCAGT
Shewanella sp MR-7 Shewmr7_0613 -93 5.2 ACTGCATTTTTATTCATC
Shewanella baltica OS155 Sbal_0608 -96 5.5 AGTGAATTTTTATTCAAC
Shewanella denitrificans OS217 Sden_0825 -89 5.7 AGTGAATTTTTATTCACT
Shewanella frigidimarina NCIMB 400 Sfri_0640 -104 5.6 AATGAATTTTTATTCAAT
Shewanella amazonensis SB2B Sama_0671 -98 5.3 TCTGCATTTTTATTCACA
Shewanella loihica PV-4 Shew_0866 -95 5.1 CCTGAATTTTTATTCACA
Shewanella pealeana ATCC 700345 Spea_0849 -95 5.5 AATGAATTTTTATTCAGA
Shewanella halifaxensis HAW-EB4 Shal_0902 -95 5.5 AATGAATTTTTATTCACA
Shewanella piezotolerans WP3 swp_4101 -95 5.3 CATGAATTTTTATTCAAT
Shewanella sediminis HAW-EB3 Ssed_0951 -95 5.2 GTTGCATTTTTATTCATA
Shewanella woodyi ATCC 51908 Swoo_1001 -95 5 ATTGCATTCTTATTCATT
Position: -336
Score: 4.5
Sequence: CATGCATAAATACTCACA
Position: -312
Score: 4.4
Sequence: ATTCAAAAATAATTCACT
Locus tag: SVI_0915
SVI_0915 -336 4.5 CATGCATAAATACTCACA
-312 4.4 ATTCAAAAATAATTCACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltB
Ortholog function: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Shewanella oneidensis MR-1 SO_1325 -359 4.5 AAAGAATAACAATTCACT
-313 4.3 TTTGCAATAAAAATCACT
Shewanella putrefaciens CN-32 Sputcn32_1136 -358 4.7 GAAGAATAAAAATTCACT
-312 4.3 TTTGCAATAAAAATCACT
Shewanella sp W3-18-1 Sputw3181_3028 -358 4.8 GGAGAATAAAAATTCACT
-312 4.3 TTTGCAATAAAAATCACT
Shewanella sp ANA-3 Shewana3_3050 -360 4.5 ATAGAATAACAATTCATT
-339 4 TATAAATTTTTATACATC
-314 4.3 TTTGCAATAAAAATCACT
Shewanella sp MR-4 Shewmr4_2872 -359 4.5 AAAGAATAACAATTCACT
-313 4.3 TTTGCAATAAAAATCACT
Shewanella sp MR-7 Shewmr7_2954 -359 4.5 AAAGAATAACAATTCACT
-313 4.3 TTTGCAATAAAAATCACT
Shewanella baltica OS155 Sbal_1178 -361 5.3 AATGAATAATAATTCAAC
-315 4.3 TTTGCAATAAAAATCACT
Shewanella denitrificans OS217 Sden_2790 -359 5.1 AGTGAATATTTAGTCAGT
Shewanella frigidimarina NCIMB 400 Sfri_2951 -358 5 AATGAATATTTAATCATT
-312 4.3 TTTAAAATAAAATTCACT
Shewanella amazonensis SB2B Sama_0857 -362 4.6 TTTGAATAGTTAATCAAT
-316 4 CCTGCAAAAAAAATCACT
Shewanella loihica PV-4 Shew_1032 -324 3.8 TTTGTTAAATAATTCACT
-303 4.3 TATGCAATAAAAATCACT
Shewanella pealeana ATCC 700345 Spea_1013 -354 4.9 AATGCATAAATAGTCACA
-330 4.3 AGTGATTATCATTTCACT
-309 4.3 TCTGCAAAAAAAATCACT
Shewanella halifaxensis HAW-EB4 Shal_1061 -355 4.6 TATGCATAAATAAGCAAA
-331 3.8 AGTGACTACCATTTCACT
-310 4 TCTGCAAGAAAAATCACT
Shewanella piezotolerans WP3 swp_3803 -355 4.4 TCTGCATAATTAGTCAAG
-331 4.3 AGTGACTATCATTTCACT
-310 4.3 TTTGCAATAAAAATCACT
Shewanella sediminis HAW-EB3 Ssed_1126 -301 4.1 CGTGCAAAAAAAATCACT
-127 4.3 ACTCAAATTTTATGCAAT
-62 3.8 GGTGAATATCTATACTAA
Shewanella woodyi ATCC 51908 Swoo_1221 -349 4.7 ACTGCATAAATAAGCAAA
-314 3.9 ATTCATTATATTTGCAAT
Position: -162
Score: 4
Sequence: TATGCCTGTTGATGCAAT
Position: -136
Score: 4.4
Sequence: AGTCAATATTATTTCATT
Locus tag: SVI_1785
SVI_1785 -162 4 TATGCCTGTTGATGCAAT
-136 4.4 AGTCAATATTATTTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2753
Ortholog function: Prolyl endopeptidase (EC 3.4.21.26)
Shewanella oneidensis MR-1 SO_2753 -445 4.1 AATGCATTTGCAATCAAC
-173 5 AATGCATAAAAATACACT
Shewanella putrefaciens CN-32 Sputcn32_1602 -444 4.1 AATGCATTTGCAATCAAC
-193 3.6 AATAACTTATCAATCAGT
-172 5 AGTGCATAAAAATACATT
Shewanella sp W3-18-1 Sputw3181_2420 -444 4.1 AATGCATTTGCAATCAAC
-193 3.6 AATAACTTATCAATCAGT
-172 5 AGTGCATAAAAATACATT
Shewanella sp ANA-3 Shewana3_2536 -444 4.1 AATGCATTTGCAATCAAC
-172 5 AATGCATAAAAATACACT
Shewanella sp MR-4 Shewmr4_2373 -445 4.1 AATGCATTTGCAATCAAC
-182 4.2 AGTCAAAATTAATGCATA
-172 5 AATGCATAAAAATACACT
Shewanella sp MR-7 Shewmr7_2445 -445 4.1 AATGCATTTGCAATCAAC
-172 5 AATGCATAAAAATACACT
Shewanella baltica OS155 Sbal_1741 -444 4.1 AATGCATTTGCAATCAAC
-192 3.9 AATAACTTATAAATCACT
-171 4.9 AGTGCATAATAATACACT
Shewanella pealeana ATCC 700345 Spea_2569 -297 4.2 ATTGAATAAAGATGAACT
-215 3.9 CATGATATTTAATTCATC
Shewanella halifaxensis HAW-EB4 Shal_1686 -230 3.9 CATGATATTTAATTCATC
Position: -266
Score: 4.3
Sequence: ACTGAATTTAAATCCTGT
Position: -102
Score: 3.8
Sequence: TATCAATATCAATTAACA
Locus tag: SVI_2344
SVI_2344 -266 4.3 ACTGAATTTAAATCCTGT
-102 3.8 TATCAATATCAATTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: omp(Arg)
Ortholog function: TonB-dependent receptor
Shewanella oneidensis MR-1 SO_2427 -383 4.7 TATGCATATTTTTTCATT
-204 3.7 TATGTGTAAGCATTCAAT
Shewanella putrefaciens CN-32 Sputcn32_1940 -478 4 TGTGCATAAAAATTACAT
Shewanella sp W3-18-1 Sputw3181_2068 -517 3.8 GATGCATATTTGTTAATT
-478 4 TGTGCATAAAAATTACAT
Shewanella sp ANA-3 Shewana3_1958 -468 3.9 AATCACAATTTATTCATT
-384 3.8 TATGCATATTTCTCCATA
-106 3.6 ACTGAATGAAAGTGAATC
Shewanella sp MR-4 Shewmr4_1903 -457 3.5 AATCACAAGTTATTCATT
-373 3.6 CGTGCATAATTAATCGAC
-105 3.6 ACTGAATGAAAGTGAATC
Shewanella sp MR-7 Shewmr7_2075 -457 3.5 AATCACAAGTTATTCATT
-373 3.9 TGTGCATAATTAATCGAC
-105 3.6 ACTGAATGAAAGTGAATC
Shewanella baltica OS155 Sbal_2044 -487 3.8 TTTGCATAAATATTACAA
-390 3.5 TGTCTATAGCTATGCATT
Shewanella frigidimarina NCIMB 400 Sfri_2416 -451 4.9 TCTGAATAAATACTCAGT
-72 4.2 ACTGACCAATTATTCATA
Shewanella amazonensis SB2B Sama_1838 -201 5.5 TTTGAATAAATATTCAGT
Shewanella loihica PV-4 Shew_2074 -609 4.7 AGTGCATTTAAATTGAAG
Shewanella piezotolerans WP3 swp_2362 -612 4 TGTGATTTTTAATGCCTC
-393 3.7 AGTTCATTTAATATCAAA
Shewanella sediminis HAW-EB3 Ssed_2036 -287 3.6 TTTGCATGGTTAGTGAAA
Shewanella woodyi ATCC 51908 Swoo_2565 -598 3.9 TGTGCATATAATTTAATC
-551 4.3 GATGAGTATATATTGATT
Position: -259
Score: 4.1
Sequence: ATTCCATTATTAGTCATC
Position: -227
Score: 4.3
Sequence: TGTGCATTTCGATGCAAA
Locus tag: SVI_2771
SVI_2771 -259 4.1 ATTCCATTATTAGTCATC
-227 4.3 TGTGCATTTCGATGCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: astB
Ortholog function: Succinylarginine dihydrolase (EC 3.5.3.23)
Shewanella oneidensis MR-1 SO_2706 -227 4 AGTCACTTTTTAATCAAA
-142 3.6 AAGAAATAGTTATGCATT
-40 4.1 TTTGAATAAATAATAACC
Shewanella putrefaciens CN-32 Sputcn32_2251 -225 4 AGTCACTTTTTAATCAAA
-131 4.2 TATGCATTTATCGTCAAA
Shewanella sp W3-18-1 Sputw3181_1757 -225 4 AGTCACTTTTTAATCAAA
-131 4.2 TATGCATTTATCGTCAAA
Shewanella sp ANA-3 Shewana3_1728 -227 4 AGTCACTTTTTAATCAAA
-132 3.6 TATGCATTTATCGTGAAA
-40 4.1 TTTGAATAAATAATAACC
Shewanella sp MR-4 Shewmr4_1584 -227 4 AGTCACTTTTTAATCAAA
-142 3.6 AAGAAATAGTTATGCATT
Shewanella sp MR-7 Shewmr7_1659 -227 4 AGTCACTTTTTAATCAAA
-142 3.6 AAGAAATAGTTATGCATT
Shewanella baltica OS155 Sbal_2497 -226 4 AGTCACTTTTTAATCAAA
-132 3.6 TATGCATTTATCGTGAAA
-40 3.6 TATGAACAAATAATAACT
Shewanella denitrificans OS217 Sden_2329 -201 4.7 CTTGCATTTTTAATCACT
Shewanella frigidimarina NCIMB 400 Sfri_2479 -186 5 AGTGCATTTTTAGTCATT
Shewanella amazonensis SB2B Sama_1321 -233 4.1 AGTCACTTTTTAATCAAT
-147 3.6 AAGCAATAGTTATGCAAA
Shewanella pealeana ATCC 700345 Spea_1534 -137 5 TGTGCATTTCAATTCAAA
Shewanella halifaxensis HAW-EB4 Shal_1604 -169 4.1 ATTTCATTAATAGTCATC
-137 4.6 TGTGCATTTTGATGCAAA
Shewanella piezotolerans WP3 swp_1743 -167 4 ATTTCATTATTAGTCATC
-135 4.6 TGTGCATTTTGATGCAAA
Shewanella sediminis HAW-EB3 Ssed_2842 -354 4 ATTTCATTATTAGTCATC
-322 4.3 TGTGCATTTCGATGCAAA
Shewanella woodyi ATCC 51908 Swoo_1802 -236 4 ATTTCATTATTAGTCATC
-204 5 TGTGAATTTCAATGCAAA
Position: -238
Score: 4.7
Sequence: ACAGCATAAAAATTCACA
Locus tag: SVI_2920
SVI_2920 -238 4.7 ACAGCATAAAAATTCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aprE
Ortholog function: Alkaline serine protease
Shewanella putrefaciens CN-32 Sputcn32_2477 -156 5.6 ATTGAATTTTTATTCACA
Shewanella sp W3-18-1 Sputw3181_1531 -156 5.6 ATTGAATTTTTATTCACA
Shewanella sp ANA-3 Shewana3_1443 -190 4.7 CATGAGTATTTATTCATT
Shewanella sp MR-4 Shewmr4_1390 -190 4.9 TATGAGTATTTATTCATT
-123 3.8 ATTTAATTTACAAACACT
Shewanella sp MR-7 Shewmr7_1455 -190 4.9 TATGAGTATTTATTCATT
-123 3.8 ATTTAATTTACAAACACT
Shewanella baltica OS155 Sbal_2779 -189 5.4 GTTGAATTTATATTCACA
Shewanella frigidimarina NCIMB 400 Sfri_2692 -190 5.4 GTTGAATTTTAATTCAAA
Shewanella amazonensis SB2B Sama_2185 -236 4.3 TCCGAATATTCATTCAGC
-185 4.5 TTTGCATAAATATTCTAA
Shewanella loihica PV-4 Shew_2443 -229 4.2 TTCGAATAAATACTCAAA
-166 4.5 TCTGCATAAAAATGCTCT
Shewanella sediminis HAW-EB3 Ssed_1611 -187 4.2 ACGCAATATTTATTCAGT
Shewanella woodyi ATCC 51908 Swoo_3041 -240 4.2 GTCGCATATTAATTCAGG
Position: -58
Score: 4.6
Sequence: ACTGTATATAAAATCAGT
Locus tag: SVI_3184
SVI_3184 -58 4.6 ACTGTATATAAAATCAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: recN
Ortholog function: DNA repair protein RecN
Shewanella oneidensis MR-1 SO_3462 -71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella putrefaciens CN-32 Sputcn32_2771 -71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella sp W3-18-1 Sputw3181_1241 -71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella sp ANA-3 Shewana3_1104 -71 5.1 ACTGTATATAAATTCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella sp MR-4 Shewmr4_1104 -71 5.1 ACTGTATATAAATTCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella sp MR-7 Shewmr7_1170 -71 5.1 ACTGTATATAAATTCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella baltica OS155 Sbal_3153 -137 3.6 CATGCATAATCAGTTAAT
-71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella denitrificans OS217 Sden_1151 -95 3.7 ACTCAAAATTAACTCAGC
-70 3.9 ACTGTATAAAAAACCAGT
-48 3.7 ACTGTTTATCAATACAGT
Shewanella frigidimarina NCIMB 400 Sfri_1043 -112 3.6 GATGATAAAATAGTCAAC
-71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella amazonensis SB2B Sama_1026 -72 3.8 ACTGTACAAAAAATCAGT
-50 3.7 ACTGTGTATCAATACAGT
Shewanella loihica PV-4 Shew_1196 -61 5.1 ACTGTATAAAAATTCAGT
Shewanella sediminis HAW-EB3 Ssed_1281 -61 4.6 ACTGTATATAAAATCAGT
Position: -88
Score: 4.9
Sequence: TTTGAATGGATATTCAAA
Locus tag: SVI_3244
SVI_3244 -88 4.9 TTTGAATGGATATTCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argW
Ortholog function: Predicted arginine uptake transporter, COG3314 family
Shewanella oneidensis MR-1 SO_1245 -99 4.8 GTTGAATGAAAATGCAGC
Shewanella putrefaciens CN-32 Sputcn32_2808 -124 4.9 GTTGAATGAAAATGCACC
Shewanella sp W3-18-1 Sputw3181_1204 -124 4.9 GTTGAATGAAAATGCACC
Shewanella sp ANA-3 Shewana3_1062 -99 4.9 GTTGAATGAAAATGCACC
Shewanella sp MR-4 Shewmr4_1058 -98 4.8 GTTGAATGAAAATGCATC
Shewanella sp MR-7 Shewmr7_1129 -98 4.8 GTTGAATGAAAATGCATC
Shewanella baltica OS155 Sbal_3205 -99 5.2 GTTGAATTTAAATGCACC
Shewanella denitrificans OS217 Sden_1037 -98 4.1 ACTCTATTTTTATGCAGC
Shewanella frigidimarina NCIMB 400 Sfri_1012 -88 4.8 ACTGAATGGACATTCAAT
Shewanella amazonensis SB2B Sama_0994 -102 4.2 CCTGCATGGACATGCACT
Shewanella loihica PV-4 Shew_2790 -90 4.5 CATGAATGGATATTCAGA
Shewanella pealeana ATCC 700345 Spea_3024 -93 4.9 GTTGAATGGATATTCAAT
Shewanella halifaxensis HAW-EB4 Shal_3114 -91 4.9 GTTGAATGGATATTCAAT
Shewanella piezotolerans WP3 swp_1256 -90 5.2 GTTGAATGAATATTCAAT
Shewanella sediminis HAW-EB3 Ssed_3353 -58 4.8 TTTGAATGGATATTCATA
Shewanella woodyi ATCC 51908 Swoo_3520 -89 4.6 CATGAATGGATATTCAGT
Position: -87
Score: 5.3
Sequence: TGTGCATTAAAATGCAAT
Locus tag: SVI_4056
SVI_4056 -87 5.3 TGTGCATTAAAATGCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argA
Ortholog function: N-acetylglutamate synthase (EC 2.3.1.1)
Shewanella oneidensis MR-1 SO_4245 -141 4.3 TTTGAAAATATAAGCACT
-79 5.4 GGTGAATTAAAATGCAAT
Shewanella putrefaciens CN-32 Sputcn32_0465 -117 3.9 AGTGAGAATAAATTCTTT
-96 5.5 TGTGAATTAAAATGCAAT
Shewanella sp W3-18-1 Sputw3181_0368 -117 3.9 AGTGAGAATAAATTCTTT
-96 5.5 TGTGAATTAAAATGCAAT
Shewanella sp ANA-3 Shewana3_3767 -141 4.3 TTTGAAAATATAAGCACT
-79 5.4 GGTGAATTAAAATGCAAT
Shewanella sp MR-4 Shewmr4_3594 -141 4.3 TTTGAAAATATAAGCACT
-79 5.4 GGTGAATTAAAATGCAAT
Shewanella sp MR-7 Shewmr7_0362 -100 3.8 AATGAGAATAAATTCTTT
-79 5.4 GGTGAATTAAAATGCAAT
Shewanella baltica OS155 Sbal_0380 -118 3.8 AATGAGAATAAATTCTTT
-97 5.5 TGTGAATTAAAATGCAAT
Shewanella denitrificans OS217 Sden_0329 -212 4.3 TCTGTAATAAAATGCACT
-144 5.4 ACTGCATTAAAATGCAAT
-123 4 ATTGCGTTTTTATTGATG
Shewanella frigidimarina NCIMB 400 Sfri_3825 -130 4.2 AGTGAAATAAAATGCTTT
-109 5.6 AGTGAATTAAAATGCAAT
Shewanella amazonensis SB2B Sama_0330 -86 5.7 TGTGAATTTAAATTCACT
Shewanella loihica PV-4 Shew_3478 -80 5.5 TGTGAATTTAAATGCAAT
Shewanella pealeana ATCC 700345 Spea_3834 -120 4.3 AGTGAAAATAAATGCTTT
-99 5.6 AATGAATTTAAATGCAAT
-34 4.4 GGTGAATATCTATTTATT
Shewanella halifaxensis HAW-EB4 Shal_0432 -100 5.6 AATGAATTTAAATGCACT
Shewanella piezotolerans WP3 swp_2207 -110 3.7 AGTGATAATAAATGCTTT
-89 5.4 ATTGCATTAAAATGCAAT
Shewanella sediminis HAW-EB3 Ssed_0388 -199 4.9 ACTCAATAAAAATTCACA
-88 5.3 TTTGCATTAAAATGCAAT
Shewanella woodyi ATCC 51908 Swoo_4558 -198 4.9 TGTGAAAAAATATTCAGT
-84 5.6 AGTGAATTAAAATGCAAT
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