Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of TyrR regulog to Pseudoalteromonas atlantica T6c

Reference regulog properties
Source regulog: TyrR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: TyrR
Regulation mode: activator
Biological process: Amino acid utilization
Effector: Tyrosine; Phenylalanine
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Pseudoalteromonas atlantica T6c
Orthologous TF(s) Patl_2998
Regulated genes 10
Built upon 312 sites [see more]
Predicted regulatory interactions in Pseudoalteromonas atlantica T6c
Locus tag Position Score Sequence
Position: 0
Score: 4.1
Sequence: ATGTCATTATCAAATTACAG
Locus tag: Patl_0951
Patl_0951 0 4.1 ATGTCATTATCAAATTACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ivdF
Ortholog function: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Shewanella oneidensis MR-1 SO_1682 -159 4.4 CTGTAAATCCTGACTGACAA
Shewanella putrefaciens CN-32 Sputcn32_1402 -167 4.3 CTGTAAATCCTTACTGACAA
Shewanella sp W3-18-1 Sputw3181_2699 -167 4.3 CTGTAAATCCTTACTGACAA
Shewanella sp ANA-3 Shewana3_2766 -159 4.4 CTGTAAATCCTGACTGACAA
Shewanella sp MR-4 Shewmr4_2592 -159 4.4 CTGTAAATCCTGACTGACAA
Shewanella sp MR-7 Shewmr7_2659 -159 4.4 CTGTAAATCCTGACTGACAA
Shewanella baltica OS155 Sbal_1500 -162 4.3 CTGTAAATCCTTACTGACAT
Shewanella denitrificans OS217 Sden_1938 -159 4.4 GTGTAAATCTTCAGTGACAA
Shewanella frigidimarina NCIMB 400 Sfri_1343 -140 4.1 CTGTAAATCTTCACTGACAA
Shewanella amazonensis SB2B Sama_1380 -195 3.8 GTGTCAATCTCAGTTCCCGC
-173 4.6 CTGTAAATCCAGAGTGACAA
Shewanella loihica PV-4 Shew_1672 -168 4.4 CTGTAAATTCAGCCTGACAA
Shewanella pealeana ATCC 700345 Spea_2778 -231 4.5 GTGTAAATTCTATGTGACAA
Shewanella halifaxensis HAW-EB4 Shal_2873 -231 4.4 GTGTAAATCCTTTGTGACAT
Shewanella piezotolerans WP3 swp_3382 -75 3.8 TTTTAAGTTGATGTTTACAC
Shewanella sediminis HAW-EB3 Ssed_1478 -185 4.5 CTGTAAATCCTGAGTGACAT
Shewanella woodyi ATCC 51908 Swoo_3197 -173 4.7 CTGTAAATCTTGAGTGACAT
Position: -178
Score: 4.2
Sequence: AGGTAAAGTATGAGTTACAA
Locus tag: Patl_2923
Patl_2923 -178 4.2 AGGTAAAGTATGAGTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ivdA
Ortholog function: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Shewanella oneidensis MR-1 SO_1677 -159 4.4 CTGTAAATCCTGACTGACAA
Shewanella putrefaciens CN-32 Sputcn32_1397 -167 4.3 CTGTAAATCCTTACTGACAA
Shewanella sp W3-18-1 Sputw3181_2704 -167 4.3 CTGTAAATCCTTACTGACAA
Shewanella sp ANA-3 Shewana3_2771 -159 4.4 CTGTAAATCCTGACTGACAA
Shewanella sp MR-4 Shewmr4_2597 -159 4.4 CTGTAAATCCTGACTGACAA
Shewanella sp MR-7 Shewmr7_2664 -159 4.4 CTGTAAATCCTGACTGACAA
Shewanella baltica OS155 Sbal_1495 -162 4.3 CTGTAAATCCTTACTGACAT
Shewanella denitrificans OS217 Sden_1943 -159 4.4 GTGTAAATCTTCAGTGACAA
Shewanella frigidimarina NCIMB 400 Sfri_1338 -140 4.1 CTGTAAATCTTCACTGACAA
Shewanella amazonensis SB2B Sama_1375 -195 3.8 GTGTCAATCTCAGTTCCCGC
-173 4.6 CTGTAAATCCAGAGTGACAA
Shewanella loihica PV-4 Shew_1667 -168 4.4 CTGTAAATTCAGCCTGACAA
Shewanella pealeana ATCC 700345 Spea_2783 -231 4.5 GTGTAAATTCTATGTGACAA
Shewanella halifaxensis HAW-EB4 Shal_2878 -231 4.4 GTGTAAATCCTTTGTGACAT
Shewanella piezotolerans WP3 swp_3387 -75 3.8 TTTTAAGTTGATGTTTACAC
Shewanella sediminis HAW-EB3 Ssed_1473 -185 4.5 CTGTAAATCCTGAGTGACAT
Shewanella woodyi ATCC 51908 Swoo_3202 -173 4.7 CTGTAAATCTTGAGTGACAT
Position: -121
Score: 4.2
Sequence: TTGTAACTCATACTTTACCT
Locus tag: Patl_2924
Patl_2924 -121 4.2 TTGTAACTCATACTTTACCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: liuR
Ortholog function: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Shewanella oneidensis MR-1 SO_1898 -105 4.6 GTGGCAACAAGAATTGACAA
Shewanella putrefaciens CN-32 Sputcn32_1720 -108 4.5 ATGGCAATTGGGATTGACAC
Shewanella sp W3-18-1 Sputw3181_2305 -108 4.5 ATGGCAATTGGGATTGACAC
Shewanella sp ANA-3 Shewana3_1673 -105 4.6 GTGGCAACAAGAATTGACAA
Shewanella sp MR-4 Shewmr4_2321 -105 4.6 GTGGCAACAAGAATTGACAA
Shewanella sp MR-7 Shewmr7_2393 -105 4.6 GTGGCAACAAGAATTGACAA
Shewanella baltica OS155 Sbal_2827 -108 4.5 ATGGCAATTGGGATTGACAC
Shewanella denitrificans OS217 Sden_2244 -117 4.2 GTGGAAACAGAATTTAACAC
Shewanella frigidimarina NCIMB 400 Sfri_2726 -117 4.7 GTGGCAAGCAAAATTAACAC
Shewanella amazonensis SB2B Sama_1363 -123 4.2 CTGTAAGCTAAGCCTGACAC
Shewanella pealeana ATCC 700345 Spea_2796 -111 4.4 GTGGCAAGCGCAATTGACAT
Shewanella halifaxensis HAW-EB4 Shal_2901 -110 4.4 GTGGCAAGCGCGATTGACAT
Shewanella piezotolerans WP3 swp_3441 -76 4.2 TTGGCACGCACAATTGACAT
Shewanella woodyi ATCC 51908 Swoo_3222 -129 4.5 CTGGAAAACTTACTTGCCAT
Position: -41
Score: 4.9
Sequence: GTGTAATATTATCTTTACAT
Locus tag: Patl_2998
Patl_2998 -41 4.9 GTGTAATATTATCTTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tyrR
Ortholog function: Transcriptional regulator of aromatic amino acid biosynthesis
Shewanella oneidensis MR-1 SO_1669 -190 4.7 CTGTAAACTAGGCTTGCCAC
Shewanella putrefaciens CN-32 Sputcn32_1388 -188 4.8 CTGTAAACTTGACTTGCCAC
Shewanella sp W3-18-1 Sputw3181_2713 -188 4.8 CTGTAAACTTGACTTGCCAC
Shewanella sp ANA-3 Shewana3_2779 -205 4.7 CTGTAAACTAGACTTGCCAC
Shewanella sp MR-4 Shewmr4_2605 -205 4.7 CTGTAAACTAGACTTGCCAC
Shewanella sp MR-7 Shewmr7_2672 -205 4.7 CTGTAAACTAGACTTGCCAC
Shewanella baltica OS155 Sbal_1486 -196 4.7 CTGTAAACTAGGCTTGCCAC
Shewanella denitrificans OS217 Sden_2593 -155 4.6 CTGTAAACAAGACTTGCCAC
Shewanella frigidimarina NCIMB 400 Sfri_1330 -92 4.7 CTGTAAACTTCACTTGCCAC
Shewanella amazonensis SB2B Sama_2220 -134 4.6 CTGTAAACAAGACTTGCCAC
Shewanella loihica PV-4 Shew_1437 -162 4.7 GTGTAAACAACTCTTGCCAC
Shewanella pealeana ATCC 700345 Spea_1450 -158 4.6 CTGTAAACAAGTCTTGCCAC
Shewanella halifaxensis HAW-EB4 Shal_1533 -159 4.1 CTGTAAACAAGCCTTGCCAC
Shewanella piezotolerans WP3 swp_1652 -309 4.6 cTGTAAAcaagtCTTgcCAC
Shewanella sediminis HAW-EB3 Ssed_2928 -151 4.6 CTGTAAACAAGACTTGCCAC
Shewanella woodyi ATCC 51908 Swoo_1717 -161 4.6 CTGTAAACAAGACTTGCCAC
Position: -117
Score: 4.1
Sequence: TTGTAGCTTAATGTTTACAT
Locus tag: Patl_2999
Patl_2999 -117 4.1 TTGTAGCTTAATGTTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: phhA
Ortholog function: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Shewanella oneidensis MR-1 SO_1666 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella putrefaciens CN-32 Sputcn32_1386 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella sp W3-18-1 Sputw3181_2715 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella sp ANA-3 Shewana3_2781 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella sp MR-4 Shewmr4_2607 -122 4.4 TTGTAATATTTACTTTACGT
Shewanella sp MR-7 Shewmr7_2674 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella baltica OS155 Sbal_1484 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella denitrificans OS217 Sden_2595 -127 4.4 TTGTATGCTTAAGTTTACAA
Shewanella frigidimarina NCIMB 400 Sfri_1328 -121 4.1 TTGTATTTATTTGTTTACGA
Shewanella amazonensis SB2B Sama_2222 -123 4.3 TTGTAATAAAAGCTTTACGA
Shewanella loihica PV-4 Shew_1435 -87 4.7 ATGTAAATTTGAGGTTACAT
Shewanella pealeana ATCC 700345 Spea_1448 -239 4.3 GTGTCAATTTCTATATACGC
-173 4.8 GTGTAACATTAGCATTACAC
Shewanella halifaxensis HAW-EB4 Shal_1531 -133 4.3 GTGTAACAACTTCGTTACAC
Shewanella piezotolerans WP3 swp_1650 -188 4.6 CTGTAAATTATGGCTTACAA
-123 4.5 ATGTAAACTTATGGTTACGC
Shewanella sediminis HAW-EB3 Ssed_2930 -188 3.7 TCGTCAATAAATGGTGACGA
-122 4.2 TTGTAAGCAAATTGTTACAC
Shewanella woodyi ATCC 51908 Swoo_1715 -186 3.8 TTGGCAATAATTCAATACGA
-121 4.6 GTGTAACTTTTTGGTTACAA
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