Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CcpA regulog to Geobacillus sp. WCH70

Reference regulog properties
Source regulog: CcpA - Bacillales
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein
Phylum: Firmicutes
Propagated regulon:
Target genome Geobacillus sp. WCH70
Orthologous TF(s) GWCH70_2733
Regulated genes 26
Built upon 559 sites [see more]
Predicted regulatory interactions in Geobacillus sp. WCH70
Locus tag Position Score Sequence
Position: -38
Score: 4.1
Sequence: ATGAAAGGGAATACAT
Locus tag: GWCH70_0148
GWCH70_0148 -38 4.1 ATGAAAGGGAATACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mrp
Ortholog function: Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like
Anoxybacillus flavithermus WK1 Aflv_0142 -34 4 GTGAAACCGAATACAT
Bacillus amyloliquefaciens FZB42 RBAM_001800 -32 4.1 TTGTAAACGAATACAC
Bacillus cereus ATCC 14579 BC0168 -84 4.5 ATGTAAACGCATTTAT
Bacillus licheniformis DSM 13 BLi00172 -31 4.5 TTGTAAACGAATACAA
Bacillus pumilus SAFR-032 BPUM_0145 -35 4.6 TTGTAAACGAATTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU01540 -32 4.1 TTGTAAACGAATACAC
Position: -39
Score: 5.2
Sequence: ATGAAAGCGTTGTCAA
Locus tag: GWCH70_0517
GWCH70_0517 -39 5.2 ATGAAAGCGTTGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dctA
Ortholog function: C4-dicarboxylate transport protein
Bacillus amyloliquefaciens FZB42 RBAM_004800 -54 5.3 TTGAAAACGCTATCAT
Bacillus pumilus SAFR-032 BPUM_0419 -72 4.8 TTGAAATCGCTATCAT
Bacillus subtilis subsp. subtilis str. 168 BSU04470 -64 5.3 ATGAAAACGCTATCAT
Position: -33
Score: 5.3
Sequence: TTGAAAACGTTTTCTA
Locus tag: GWCH70_0621
GWCH70_0621 -33 5.3 TTGAAAACGTTTTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: msmX
Ortholog function: Maltose/maltodextrin transport ATP-binding protein (EC 3.6.3.19)
Anoxybacillus flavithermus WK1 Aflv_2303 -30 4.4 ATGAAATCGATTACAT
Bacillus clausii KSM-K16 ABC1514 -48 4.6 ATGAAAGGGGTTACAA
Bacillus halodurans C-125 BH1140 -47 4.6 TTGTAAGCGCTACAAT
Bacillus licheniformis DSM 13 BLi01052 -34 4.6 GTTAAAGCGCTTACAT
Bacillus pumilus SAFR-032 BPUM_0922 -41 4.1 AGTGAAGCGCTTTCAA
Oceanobacillus iheyensis HTE831 OB1134 -37 4.1 ATGTAATCGTTAACAC
Position: -141
Score: 5
Sequence: TTGAAAACGTTTAAAA
Locus tag: GWCH70_0919
GWCH70_0919 -141 5 TTGAAAACGTTTAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: odhA
Ortholog function: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Bacillus amyloliquefaciens FZB42 RBAM_019130 -101 4.7 TTGGAAGCGTTTTTAT
Bacillus cereus ATCC 14579 BC1252 -101 4.3 AAGAAAACATTTACAT
Bacillus clausii KSM-K16 ABC2114 -63 4.8 TTGTAAGCGCTTGAAA
Bacillus halodurans C-125 BH2206 -64 5 ATGAAAGCGTTATAAA
Bacillus licheniformis DSM 13 BLi02260 -100 4.3 GTGGAAGCGTTTTTAT
Bacillus pumilus SAFR-032 BPUM_1862 -101 4.7 TTGGAAGCGTTTTATT
Bacillus subtilis subsp. subtilis str. 168 BSU19370 -101 4.7 TTGGAAGCGTTTTTAT
Geobacillus kaustophilus HTA426 GK1023 -123 4.1 GTGAAAACGTTTATAC
Oceanobacillus iheyensis HTE831 OB1089 -51 4.3 TTTGAACCGTTTTCAT
Paenibacillus sp. JDR-2 Pjdr2_4724 -242 4.4 ATGAATACGCTTTAAA
Position: -46
Score: 4.3
Sequence: ATGAAAGCGCTAGAAC
Locus tag: GWCH70_1099
GWCH70_1099 -46 4.3 ATGAAAGCGCTAGAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: sucC
Ortholog function: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Bacillus amyloliquefaciens FZB42 RBAM_015920 -52 4.8 ATGAAAGCGCAGTCTA
Bacillus licheniformis DSM 13 BLi01829 -53 4.8 ATGAAAGCGCAGTCTA
Bacillus pumilus SAFR-032 BPUM_1507 -57 4.8 ATGAAAGCGCAGTCTA
Bacillus subtilis subsp. subtilis str. 168 BSU16090 -51 4.8 ATGAAAGCGCAGTCTA
Geobacillus kaustophilus HTA426 GK1208 -47 4.2 ATGAAAGCGCTAAGAC
Position: -220
Score: 4.9
Sequence: TTGACAACGCTTACAT
Position: -89
Score: 4.5
Sequence: ATGTAACTGCTTTCAA
Locus tag: GWCH70_1267
GWCH70_1267 -220 4.9 TTGACAACGCTTACAT
-89 4.5 ATGTAACTGCTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpF
Ortholog function: Glycerol uptake facilitator protein
Bacillus cereus ATCC 14579 BC1034 -191 4.7 TTGACACCGCTTTCAT
Bacillus clausii KSM-K16 ABC3383 -198 4.2 ATGTATCCGTTTACAA
Bacillus licheniformis DSM 13 BLi00994 -207 4.5 TTGACAACGCTTTCAC
Bacillus pumilus SAFR-032 BPUM_0882 -191 4.9 TTGACAACGTTTTCAT
Bacillus subtilis subsp. subtilis str. 168 BSU09280 -182 4.7 TTGACACCGCTTTCAT
Geobacillus kaustophilus HTA426 GK1359 -206 5.1 TTGACAGCGTTTTCAA
Oceanobacillus iheyensis HTE831 OB2476 -164 4.7 TTGACAACGCTTTCAG
Position: -145
Score: 4.5
Sequence: TAGTAAACGGTTACAA
Locus tag: GWCH70_1450
GWCH70_1450 -145 4.5 TAGTAAACGGTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywcJ
Ortholog function: Formate/nitrite family of transporters
Anoxybacillus flavithermus WK1 Aflv_1436 -131 4.5 TCGTAAACGTTTACAA
Bacillus cereus ATCC 14579 BC1308 -136 5.1 TTGTAAACGTTTTCTT
Bacillus subtilis subsp. subtilis str. 168 BSU38060 -142 4.5 ATGATAGCGTTTTCGT
Position: -97
Score: 4.3
Sequence: TGTAAAACGTTTTCAA
Position: -52
Score: 4.7
Sequence: ATGAAAACGTTTCTAA
Locus tag: GWCH70_1482
GWCH70_1482 -97 4.3 TGTAAAACGTTTTCAA
-52 4.7 ATGAAAACGTTTCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: endR
Ortholog function: Probable HTH-type transcriptional regulator endR, LacI family
Bacillus amyloliquefaciens FZB42 RBAM_018000 0 4.3 ATGAAAGCGGTTCTAG
Geobacillus kaustophilus HTA426 GK1942 -50 4.5 ATGAAAACGCTTTTGA
Position: -69
Score: 4.3
Sequence: TTGAAAACGATTCCTG
Position: -56
Score: 4.3
Sequence: CTGAAAGCGGTTAAAT
Locus tag: GWCH70_1620
GWCH70_1620 -69 4.3 TTGAAAACGATTCCTG
-56 4.3 CTGAAAGCGGTTAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: treP
Ortholog function: PTS system, trehalose-specific enzyme II, BC component (EC 2.7.1.69)
Bacillus pumilus SAFR-032 BPUM_0728 318 4 GTGAAAACGCTTGCGG
Position: -119
Score: 4.9
Sequence: ATGAAAACGTTTTATA
Locus tag: GWCH70_2256
GWCH70_2256 -119 4.9 ATGAAAACGTTTTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: drm
Ortholog function: Phosphopentomutase (EC 5.4.2.7)
Anoxybacillus flavithermus WK1 Aflv_0998 -114 4.9 ATGAAAACGTTTTATA
Bacillus amyloliquefaciens FZB42 RBAM_021610 -74 4.5 ATGTAAACGGTTTATA
Bacillus cereus ATCC 14579 BC4087 -222 4.5 AAGAAAGCGTAAACAT
Bacillus licheniformis DSM 13 BLi02500 -99 4.1 GTGTAAACGGTTTATA
Bacillus pumilus SAFR-032 BPUM_2081 -82 4.5 TTGTAAACGGTTTATA
Bacillus subtilis subsp. subtilis str. 168 BSU23500 -77 4.7 ATGAAAACGGTTTATA
Position: -55
Score: 4.6
Sequence: AAGAAAGCGGTTTCTT
Locus tag: GWCH70_2295
GWCH70_2295 -55 4.6 AAGAAAGCGGTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mutA
Ortholog function: Methylmalonyl-CoA mutase (EC 5.4.99.2)
Anoxybacillus flavithermus WK1 Aflv_0966 -39 4.3 AAGAAAGCGTTTTAAC
Geobacillus kaustophilus HTA426 GK2371 -43 4.6 AAGAAAGCGGTTTCTT
Geobacillus kaustophilus HTA426 GK2370 -43 4.6 AAGAAAGCGGTTTCTT
Position: 5
Score: 4.4
Sequence: ATGGAAACGTATTCCA
Locus tag: GWCH70_2375
GWCH70_2375 5 4.4 ATGGAAACGTATTCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yqgX
Ortholog function: Similar to Hydroxyacylglutathione hydrolase, but in an organism lacking glutathione biosynthesis
Bacillus amyloliquefaciens FZB42 RBAM_023120 -109 4.4 TTTTAACCGTTTTCAT
Bacillus clausii KSM-K16 ABC2499 -98 4.3 TTGTACCCGTTTTCAT
Bacillus halodurans C-125 BH2820 -112 4.5 TTTTAAACGTTTTCTT
Bacillus licheniformis DSM 13 BLi02653 -105 4.4 TTTTAACCGTTTTCAT
Bacillus pumilus SAFR-032 BPUM_2209 -103 4.4 TTTTAACCGTTTTCAT
Bacillus subtilis subsp. subtilis str. 168 BSU24790 -84 4.3 TCGATAGCGTTTTCAT
Position: -169
Score: 4.8
Sequence: ATGTAAGCGGATACAA
Locus tag: GWCH70_2597
GWCH70_2597 -169 4.8 ATGTAAGCGGATACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dat
Ortholog function: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Anoxybacillus flavithermus WK1 Aflv_0590 -170 4.8 ATGTAAGCGGATACAT
Bacillus cereus ATCC 14579 BC1396 -153 5 TTGTAAACGTTAACAA
Bacillus licheniformis DSM 13 BLi02962 -225 5 ATGTAAGCGTATACAA
Bacillus pumilus SAFR-032 BPUM_2473 -200 4.6 GTGTAAGCGTATACAT
Geobacillus kaustophilus HTA426 GK2662 -165 5.1 ATGTAAGCGCATTCAA
Position: -97
Score: 4.1
Sequence: ATGGAAGCAATTACAT
Locus tag: GWCH70_2607
GWCH70_2607 -97 4.1 ATGGAAGCAATTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b558 subunit
Bacillus amyloliquefaciens FZB42 RBAM_025520 -143 4.3 ATGTACACGTTTTCTT
Bacillus cereus ATCC 14579 BC4518 -178 4.3 ATGTATACGTTTTCTT
Bacillus clausii KSM-K16 ABC2664 -190 4.3 TTGAATCCGTTTTCTT
Bacillus licheniformis DSM 13 BLi02994 -143 4.4 ATGTACGCGTTTTCTT
Bacillus pumilus SAFR-032 BPUM_2503 -139 4.2 ATGTACGCGGTTTCTT
Bacillus subtilis subsp. subtilis str. 168 BSU28450 -139 4.4 ATGTACGCGTTTTCTT
Position: -117
Score: 4.7
Sequence: ATGTAAGCACTTTCTA
Locus tag: GWCH70_2679
GWCH70_2679 -117 4.7 ATGTAAGCACTTTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mmgD
Ortholog function: Citrate synthase (si) (EC 2.3.3.1)
Anoxybacillus flavithermus WK1 Aflv_0504 -107 4.6 ATGTAAGCATTTTCTT
Anoxybacillus flavithermus WK1 Aflv_0504 -107 4.6 ATGTAAGCATTTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_026180 -114 4.6 ATGTAAGCATTTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_022420 -43 4.6 GTGTAAGCGTTATCTT
Bacillus clausii KSM-K16 ABC1805 -63 4.9 ATGTAAGCGCTTTATT
Bacillus clausii KSM-K16 ABC2715 174 4.6 TTGGAATCGTTTTCAA
Bacillus licheniformis DSM 13 BLi03062 -115 4.6 ATGTAAGCATTTTCTT
Bacillus licheniformis DSM 13 BLi03062 -115 4.6 ATGTAAGCATTTTCTT
Bacillus pumilus SAFR-032 BPUM_2556 -111 4.6 ATGTAAGCATTTTCTT
-69 4.5 TGGATAGCGCTTTCAA
Bacillus pumilus SAFR-032 BPUM_2556 -111 4.6 ATGTAAGCATTTTCTT
-69 4.5 TGGATAGCGCTTTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU24140 -37 4.9 TTGTAAGCGCTGTCTA
Bacillus subtilis subsp. subtilis str. 168 BSU29140 -114 4.6 ATGTAAGCATTTTCTT
Oceanobacillus iheyensis HTE831 OB2269 -39 4.4 TTGACTGCGCTTTCAA
Position: -39
Score: 4.8
Sequence: TTGAAAGGGTTTTCAT
Locus tag: GWCH70_3155
GWCH70_3155 -39 4.8 TTGAAAGGGTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: BH3845
Ortholog function: Predicted beta-glucoside-regulated ABC transport system, sugar-binding protein
Bacillus halodurans C-125 BH3845 -81 4.9 ATGAAAGCGATTTCTT
24 4.6 ATGATAGCGCTTTCTG
Bacillus pumilus SAFR-032 BPUM_3238 -37 4.9 TTGATAACGCTTACAA
Geobacillus kaustophilus HTA426 GK3207 -41 4.6 TTGAAAGGGGTTTCAA
Position: -57
Score: 4.6
Sequence: TTGTAATCGCTTTCTT
Locus tag: GWCH70_3344
GWCH70_3344 -57 4.6 TTGTAATCGCTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mmgA
Ortholog function: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Anoxybacillus flavithermus WK1 Aflv_2739 -16 4.7 TTGAAAGGGCTTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_022450 -43 4.6 GTGTAAGCGTTATCTT
Bacillus halodurans C-125 BH3801 -65 5 ATGTAAGCGCTTAAAT
Bacillus pumilus SAFR-032 BPUM_3373 -32 4.9 ATGTAAGCGGTAACAA
Bacillus subtilis subsp. subtilis str. 168 BSU24170 -37 4.9 TTGTAAGCGCTGTCTA
Geobacillus kaustophilus HTA426 GK3397 -40 4.6 TTGTAATCGCTTTCTT
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