Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CcpA regulog to Bacillus selenitireducens MLS10

Reference regulog properties
Source regulog: CcpA - Bacillales
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus selenitireducens MLS10
Orthologous TF(s) BselDRAFT_0088
Regulated genes 26
Built upon 559 sites [see more]
Predicted regulatory interactions in Bacillus selenitireducens MLS10
Locus tag Position Score Sequence
Position: -71
Score: 4.9
Sequence: ATGACAGCGCTTTCTT
Locus tag: BselDRAFT_2464
BselDRAFT_2464 -71 4.9 ATGACAGCGCTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: BH3680
Ortholog function: Predicted beta-xyloside ABC transporter, substrate-binding component
Bacillus halodurans C-125 BH3680 6 4.9 AGGAAAACGCTTACAA
Oceanobacillus iheyensis HTE831 OB3123 9 4.7 AAGAAAGCGTTTACAG
Paenibacillus sp. JDR-2 Pjdr2_0728 -8 4.6 TTGTAAACGTGTTCAA
Position: -111
Score: 4.5
Sequence: ATGAAAGCGTTTCAAC
Locus tag: BselDRAFT_2470
BselDRAFT_2470 -111 4.5 ATGAAAGCGTTTCAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylA
Ortholog function: Xylose isomerase (EC 5.3.1.5)
Bacillus amyloliquefaciens FZB42 RBAM_017350 34 5.1 TTGAAAGCGCAAACAA
Bacillus clausii KSM-K16 ABC0572 -72 4.7 TTGACACCGCTTACAA
Bacillus halodurans C-125 BH2757 -33 4.7 TTGATAACGCTTACTT
Bacillus licheniformis DSM 13 BLi04048 -109 4.5 TTGAAAGCGATTAATT
Bacillus subtilis subsp. subtilis str. 168 BSU17600 34 4.7 TTGGAAGCGCAAACAA
Geobacillus kaustophilus HTA426 GK1875 -59 5 ATGAAAGCGTTATAAT
Position: -72
Score: 4.6
Sequence: ATGTAAGCGCTTTAAC
Locus tag: BselDRAFT_1579
BselDRAFT_1579 -72 4.6 ATGTAAGCGCTTTAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: mmgA
Ortholog function: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Anoxybacillus flavithermus WK1 Aflv_2739 -16 4.7 TTGAAAGGGCTTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_022450 -43 4.6 GTGTAAGCGTTATCTT
Bacillus halodurans C-125 BH3801 -65 5 ATGTAAGCGCTTAAAT
Bacillus pumilus SAFR-032 BPUM_3373 -32 4.9 ATGTAAGCGGTAACAA
Bacillus subtilis subsp. subtilis str. 168 BSU24170 -37 4.9 TTGTAAGCGCTGTCTA
Geobacillus kaustophilus HTA426 GK3397 -40 4.6 TTGTAATCGCTTTCTT
Position: -303
Score: 4.4
Sequence: AAGTAAGCGATTACAA
Locus tag: BselDRAFT_1589
BselDRAFT_1589 -303 4.4 AAGTAAGCGATTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: iolJ
Ortholog function: Fructose-bisphosphate aldolase class II (EC 4.1.2.13)
Bacillus cereus ATCC 14579 BC5335 -184 4.5 AAAAAAGCGTTTACAT
Paenibacillus sp. JDR-2 Pjdr2_6054 -236 4.5 ATTATAGCGCTTACAA
Position: -328
Score: 4.5
Sequence: ATGAAAGGGCTTTAAT
Locus tag: BselDRAFT_0745
BselDRAFT_0745 -328 4.5 ATGAAAGGGCTTTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywcJ
Ortholog function: Formate/nitrite family of transporters
Anoxybacillus flavithermus WK1 Aflv_1436 -131 4.5 TCGTAAACGTTTACAA
Bacillus cereus ATCC 14579 BC1308 -136 5.1 TTGTAAACGTTTTCTT
Bacillus subtilis subsp. subtilis str. 168 BSU38060 -142 4.5 ATGATAGCGTTTTCGT
Position: -226
Score: 4.7
Sequence: TTGACAACGCTTTCAG
Locus tag: BselDRAFT_0821
BselDRAFT_0821 -226 4.7 TTGACAACGCTTTCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpF
Ortholog function: Glycerol uptake facilitator protein
Bacillus cereus ATCC 14579 BC1034 -191 4.7 TTGACACCGCTTTCAT
Bacillus clausii KSM-K16 ABC3383 -198 4.2 ATGTATCCGTTTACAA
Bacillus licheniformis DSM 13 BLi00994 -207 4.5 TTGACAACGCTTTCAC
Bacillus pumilus SAFR-032 BPUM_0882 -191 4.9 TTGACAACGTTTTCAT
Bacillus subtilis subsp. subtilis str. 168 BSU09280 -182 4.7 TTGACACCGCTTTCAT
Geobacillus kaustophilus HTA426 GK1359 -206 5.1 TTGACAGCGTTTTCAA
Oceanobacillus iheyensis HTE831 OB2476 -164 4.7 TTGACAACGCTTTCAG
Position: -66
Score: 4
Sequence: TTGTAACCCTTTACAG
Locus tag: BselDRAFT_0859
BselDRAFT_0859 -66 4 TTGTAACCCTTTACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: msmX
Ortholog function: Maltose/maltodextrin transport ATP-binding protein (EC 3.6.3.19)
Anoxybacillus flavithermus WK1 Aflv_2303 -30 4.4 ATGAAATCGATTACAT
Bacillus clausii KSM-K16 ABC1514 -48 4.6 ATGAAAGGGGTTACAA
Bacillus halodurans C-125 BH1140 -47 4.6 TTGTAAGCGCTACAAT
Bacillus licheniformis DSM 13 BLi01052 -34 4.6 GTTAAAGCGCTTACAT
Bacillus pumilus SAFR-032 BPUM_0922 -41 4.1 AGTGAAGCGCTTTCAA
Oceanobacillus iheyensis HTE831 OB1134 -37 4.1 ATGTAATCGTTAACAC
Position: -140
Score: 5.1
Sequence: TTGTAAGCGCTTACTT
Locus tag: BselDRAFT_1912
BselDRAFT_1912 -140 5.1 TTGTAAGCGCTTACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acoA
Ortholog function: Acetoin dehydrogenase E1 component alpha-subunit (EC 1.2.4.-)
Bacillus amyloliquefaciens FZB42 RBAM_008300 433 4.9 ATGTAAGCGTTTGCTT
Bacillus licheniformis DSM 13 BLi00849 415 4.9 ATGTAAGCGTTTGCTT
Bacillus pumilus SAFR-032 BPUM_0451 415 4.9 ATGTAAGCGTTTGCTT
Bacillus subtilis subsp. subtilis str. 168 BSU08060 433 4.9 ATGTAAGCGTTTGCTT
Position: 29
Score: 4.6
Sequence: TTGGAAGCGCTTTCTC
Locus tag: BselDRAFT_1913
BselDRAFT_1913 29 4.6 TTGGAAGCGCTTTCTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: acoR
Ortholog function: Transcriptional activator of acetoin dehydrogenase operon AcoR
Bacillus amyloliquefaciens FZB42 RBAM_008340 -67 5 TTGAAAGCGCTTTATT
Bacillus cereus ATCC 14579 BC2766 -78 5 TTGAAAACGCTTTTAT
Bacillus halodurans C-125 BH1826 -117 4.7 TTGTTAGCGCTTTCTT
Bacillus licheniformis DSM 13 BLi00853 -51 5.1 TTGAAAGCGCTTTTAT
Bacillus pumilus SAFR-032 BPUM_0455 -59 5.1 TTGAAAGCGCTTTTAT
Bacillus subtilis subsp. subtilis str. 168 BSU08100 -67 5 TTGAAAGCGCTTTATT
Position: 4
Score: 4.8
Sequence: ATGTAAGCGATATCAT
Locus tag: BselDRAFT_0092
BselDRAFT_0092 4 4.8 ATGTAAGCGATATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acuB
Ortholog function: Component of the acetoin degradation regulation pathway
Anoxybacillus flavithermus WK1 Aflv_0460 -70 4.7 ATGAAAACGATTTAAT
Bacillus amyloliquefaciens FZB42 RBAM_026820 -72 4.9 TTGAAAACGCTTTATA
Bacillus licheniformis DSM 13 BLi03121 -69 4.9 ATGAAAACGCTTAATA
Bacillus pumilus SAFR-032 BPUM_2618 -74 4.4 GTGAAACCGTTTTAAT
Bacillus subtilis subsp. subtilis str. 168 BSU29700 -75 4.9 TTGAAAACGCTTTATA
Position: -47
Score: 4.8
Sequence: ATGAAAGCGTTTTACA
Locus tag: BselDRAFT_0169
BselDRAFT_0169 -47 4.8 ATGAAAGCGTTTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mdh
Ortholog function: Malate dehydrogenase (EC 1.1.1.37)
Anoxybacillus flavithermus WK1 Aflv_0506 -107 4.6 ATGTAAGCATTTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_026160 -114 4.6 ATGTAAGCATTTTCTT
Bacillus clausii KSM-K16 ABC2713 174 4.6 TTGGAATCGTTTTCAA
Bacillus licheniformis DSM 13 BLi03060 -115 4.6 ATGTAAGCATTTTCTT
Bacillus pumilus SAFR-032 BPUM_2554 -111 4.6 ATGTAAGCATTTTCTT
-69 4.5 TGGATAGCGCTTTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU29120 -114 4.6 ATGTAAGCATTTTCTT
Position: -283
Score: 4.3
Sequence: GTGGTAGCGCTTACAA
Locus tag: BselDRAFT_0355
BselDRAFT_0355 -283 4.3 GTGGTAGCGCTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lutR
Ortholog function: Lactate-responsive regulator, GntR family
Anoxybacillus flavithermus WK1 Aflv_2010 -87 4.6 ATGTAAGCGCAACCAT
Bacillus amyloliquefaciens FZB42 RBAM_031490 -181 4.7 ATGTAAGCGATTACTT
Bacillus halodurans C-125 BH1835 -70 4.8 TTTAAAACGCTTACAT
Bacillus subtilis subsp. subtilis str. 168 BSU34180 -254 5 ATGTAAGCGGTTTCTA
Geobacillus kaustophilus HTA426 GK0396 -343 4.8 ATAAAAGCGTTTTCAG
Oceanobacillus iheyensis HTE831 OB0369 -36 4.1 ATGAAATCGCTTCATT
Position: -45
Score: 4.9
Sequence: ATGATAGCGGTTTCAA
Locus tag: BselDRAFT_0389
BselDRAFT_0389 -45 4.9 ATGATAGCGGTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndk
Ortholog function: Nucleoside diphosphate kinase (EC 2.7.4.6)
Anoxybacillus flavithermus WK1 Aflv_1096 -104 4.3 ATTAAATCGTTTTCAT
Bacillus amyloliquefaciens FZB42 RBAM_020890 -37 4.5 TTGAAAGCCTATACAT
Bacillus clausii KSM-K16 ABC1890 -70 4.4 TTGTTAGCGTTTTCCT
Bacillus licheniformis DSM 13 BLi02408 -39 4.5 TTGAAAGCCTATACAT
Bacillus pumilus SAFR-032 BPUM_2004 -43 4.3 ATGTAAGCCTATACAT
Bacillus subtilis subsp. subtilis str. 168 BSU22730 -38 4.1 GTGAAAGCCTATACAT
Geobacillus kaustophilus HTA426 GK2209 -105 4.4 TTATTAGCGCTTTCAA
Position: -61
Score: 4.3
Sequence: ATGAAAGCGATTAACA
Locus tag: BselDRAFT_0472
BselDRAFT_0472 -61 4.3 ATGAAAGCGATTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: odhA
Ortholog function: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Bacillus amyloliquefaciens FZB42 RBAM_019130 -101 4.7 TTGGAAGCGTTTTTAT
Bacillus cereus ATCC 14579 BC1252 -101 4.3 AAGAAAACATTTACAT
Bacillus clausii KSM-K16 ABC2114 -63 4.8 TTGTAAGCGCTTGAAA
Bacillus halodurans C-125 BH2206 -64 5 ATGAAAGCGTTATAAA
Bacillus licheniformis DSM 13 BLi02260 -100 4.3 GTGGAAGCGTTTTTAT
Bacillus pumilus SAFR-032 BPUM_1862 -101 4.7 TTGGAAGCGTTTTATT
Bacillus subtilis subsp. subtilis str. 168 BSU19370 -101 4.7 TTGGAAGCGTTTTTAT
Geobacillus kaustophilus HTA426 GK1023 -123 4.1 GTGAAAACGTTTATAC
Oceanobacillus iheyensis HTE831 OB1089 -51 4.3 TTTGAACCGTTTTCAT
Paenibacillus sp. JDR-2 Pjdr2_4724 -242 4.4 ATGAATACGCTTTAAA
Position: -75
Score: 4
Sequence: AAAAAAACGTTGACAA
Locus tag: BselDRAFT_1407
BselDRAFT_1407 -75 4 AAAAAAACGTTGACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsR
Ortholog function: Ribose operon repressor, LacI family
Anoxybacillus flavithermus WK1 Aflv_2673 -34 4.5 ATGTAACCGGTTACAG
Bacillus clausii KSM-K16 ABC3549 -33 4.1 CTGTAACCGGTTACAT
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