Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of ArgR regulog to Lactobacillus reuteri DSM 20016

Reference regulog properties
Source regulog: ArgR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: ArgR
Regulation mode: repressor, activator
Biological process: Arginine degradation; Arginine biosynthesis
Effector: Arginine
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus reuteri DSM 20016
Orthologous TF(s) Lreu_1179, Lreu_0446
Regulated genes 6
Built upon 27 sites [see more]
Predicted regulatory interactions in Lactobacillus reuteri DSM 20016
Locus tag Position Score Sequence
Position: 11
Score: 3.3
Sequence: AACTGATATTCATAAAAT
Locus tag: Lreu_0085
Lreu_0085 11 3.3 AACTGATATTCATAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: carB
Ortholog function: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5)
Lactobacillus fermentum IFO 3956 LAF_0728 -120 3.3 CGTTCATAAATAACCAAT
Lactobacillus plantarum WCFS1 lp_0526 -169 4.9 ATTGAAAAAATATTCATT
Lactobacillus reuteri JCM 1112 LAR_0080 -261 4.7 TTTGCATAAAAATTCATT
-136 3.6 CATACATATATATTCAAT
Position: -261
Score: 4.7
Sequence: TTTGCATAAAAATTCATT
Locus tag: Lreu_0086
Lreu_0086 -261 4.7 TTTGCATAAAAATTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: carA
Ortholog function: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5)
Lactobacillus reuteri JCM 1112 LAR_0081 -261 4.7 TTTGCATAAAAATTCATT
-136 3.6 CATACATATATATTCAAT
Position: 11
Score: 3.5
Sequence: AATGATTGAAATTAAAAA
Position: 19
Score: 3.4
Sequence: AAATTAAAAACTTACAGA
Position: 21
Score: 3
Sequence: ATTAAAAACTTACAGAAA
Position: 30
Score: 3.4
Sequence: TTACAGAAAAAATTCAAA
Position: 32
Score: 3.3
Sequence: ACAGAAAAAATTCAAAAA
Locus tag: Lreu_0726
Lreu_0726 11 3.5 AATGATTGAAATTAAAAA
19 3.4 AAATTAAAAACTTACAGA
21 3 ATTAAAAACTTACAGAAA
30 3.4 TTACAGAAAAAATTCAAA
32 3.3 ACAGAAAAAATTCAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: artM
Ortholog function: Arginine ABC transporter, ATP-binding protein
Lactobacillus brevis ATCC 367 LVIS_1201 -161 4.6 AATGTATAAATTTTTATA
-96 4.9 AGTGTATAAAAATAGATA
Lactobacillus casei ATCC 334 LSEI_1345 -56 4.2 ATTGCATAAAAATCAATT
Lactobacillus fermentum IFO 3956 LAF_0624 -63 3.6 CTTGCATAATAATTCGTT
Lactobacillus plantarum WCFS1 lp_2110 -17 3.8 CTTGCATAAATAATCATA
Lactobacillus reuteri JCM 1112 LAR_0697 -253 4.7 ATTGCATAAATAAACATT
Lactobacillus rhamnosus GG LGG_01357 -56 4.3 ATTGCATAAAAATTGAAT
Lactobacillus sakei subsp. sakei 23K LSA1056 -55 4.5 ATTGCATAAATATTTATA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1540 -162 3.5 GTTACATAAATATATTTT
-82 4.3 CTTGCATAAATAAACAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0629 -59 3 GATGCATATAAATTATAA
Pediococcus pentosaceus ATCC 25745 PEPE_1136 -94 5.2 AATGTATAAAAATTCATA
Position: -188
Score: 4.3
Sequence: TTTAAATAAAAATTTAAA
Position: -186
Score: 3.8
Sequence: TAAATAAAAATTTAAATT
Position: -123
Score: 3.8
Sequence: TTTTAATTGTTATGCAAA
Position: -103
Score: 4.4
Sequence: TGTGAATATTTATTCTTT
Position: -73
Score: 4.7
Sequence: ATTGCATAAATAAACATT
Position: -53
Score: 3.7
Sequence: AGTGTATATTTAGTAACA
Locus tag: Lreu_0727
Lreu_0727 -188 4.3 TTTAAATAAAAATTTAAA
-186 3.8 TAAATAAAAATTTAAATT
-123 3.8 TTTTAATTGTTATGCAAA
-103 4.4 TGTGAATATTTATTCTTT
-73 4.7 ATTGCATAAATAAACATT
-53 3.7 AGTGTATATTTAGTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: artPQ
Ortholog function: Arginine ABC transporter, substrate-binding and permease protein
Lactobacillus brevis ATCC 367 LVIS_1200 -161 4.6 AATGTATAAATTTTTATA
-96 4.9 AGTGTATAAAAATAGATA
Lactobacillus casei ATCC 334 LSEI_2810 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus casei ATCC 334 LSEI_1344 -56 4.2 ATTGCATAAAAATCAATT
Lactobacillus plantarum WCFS1 lp_2111 -17 3.8 CTTGCATAAATAATCATA
Lactobacillus reuteri JCM 1112 LAR_0698 -253 4.7 ATTGCATAAATAAACATT
Lactobacillus rhamnosus GG LGG_02816 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus rhamnosus GG LGG_01356 -56 4.3 ATTGCATAAAAATTGAAT
Lactobacillus sakei subsp. sakei 23K LSA1057 -55 4.5 ATTGCATAAATATTTATA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1541 -162 3.5 GTTACATAAATATATTTT
-82 4.3 CTTGCATAAATAAACAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0655 -62 5.3 ATTGTATAAAAATTCAAA
Pediococcus pentosaceus ATCC 25745 PEPE_1137 -94 5.2 AATGTATAAAAATTCATA
Position: -155
Score: 3
Sequence: TTATTCTATTTTTAAACT
Position: -153
Score: 3
Sequence: ATTCTATTTTTAAACTCT
Position: -132
Score: 3.1
Sequence: TATGCATGAATAATTTAT
Position: -128
Score: 3.1
Sequence: CATGAATAATTTATATTT
Position: -114
Score: 3.1
Sequence: ATTTTATGCATAAAAAGA
Position: -110
Score: 3.4
Sequence: TATGCATAAAAAGAGTTT
Position: -91
Score: 4.5
Sequence: TTTGAAAAAATATGCTAA
Position: -85
Score: 3.1
Sequence: AAAATATGCTAAAACTAT
Position: -74
Score: 3.1
Sequence: AAACTATTGATTTTTATT
Position: -70
Score: 3.5
Sequence: TATTGATTTTTATTCATA
Position: -49
Score: 3.5
Sequence: CTCGTATATTTATAAACA
Position: -43
Score: 3.3
Sequence: TATTTATAAACAACAAAT
Position: -36
Score: 3.4
Sequence: AAACAACAAATTTCAAAT
Position: -1
Score: 3.1
Sequence: TATGTCAAAAGAAAAAAT
Locus tag: Lreu_0731
Lreu_0731 -155 3 TTATTCTATTTTTAAACT
-153 3 ATTCTATTTTTAAACTCT
-132 3.1 TATGCATGAATAATTTAT
-128 3.1 CATGAATAATTTATATTT
-114 3.1 ATTTTATGCATAAAAAGA
-110 3.4 TATGCATAAAAAGAGTTT
-91 4.5 TTTGAAAAAATATGCTAA
-85 3.1 AAAATATGCTAAAACTAT
-74 3.1 AAACTATTGATTTTTATT
-70 3.5 TATTGATTTTTATTCATA
-49 3.5 CTCGTATATTTATAAACA
-43 3.3 TATTTATAAACAACAAAT
-36 3.4 AAACAACAAATTTCAAAT
-1 3.1 TATGTCAAAAGAAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argG
Ortholog function: Argininosuccinate synthase (EC 6.3.4.5)
Lactobacillus casei ATCC 334 LSEI_2811 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus fermentum IFO 3956 LAF_1625 -136 2.3 CTTGCATTTTTATTTGAT
Lactobacillus plantarum WCFS1 lp_0775 -139 4.1 TCTGCATAAAAATTCTAT
Lactobacillus reuteri JCM 1112 LAR_0702 -164 4.7 ATTAAATAATTATTCTAT
Lactobacillus rhamnosus GG LGG_02817 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0306 -47 3.5 AATGAATAGATTATGAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1459 -73 3.8 ATTGCATATTTAATCAAA
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