Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of XylR regulog to Lactobacillus fermentum IFO 3956

Reference regulog properties
Source regulog: XylR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: ROK
Regulation mode: repressor
Biological process: Xylose utilization
Effector: Xylose
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus fermentum IFO 3956
Orthologous TF(s) LAF_0400
Regulated genes 3
Built upon 15 sites [see more]
Predicted regulatory interactions in Lactobacillus fermentum IFO 3956
Locus tag Position Score Sequence
Position: -90
Score: 5.2
Sequence: GTTAGTTTTTATCAGCAACTAAC
Locus tag: LAF_0401
LAF_0401 -90 5.2 GTTAGTTTTTATCAGCAACTAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylT
Ortholog function: D-xylose proton-symporter XylT
Lactobacillus brevis ATCC 367 LVIS_0186 -111 5.4 CATGGTTGGTTGCGGCAATCAAC
-107 6.1 GTTGGTTGCGGCAATCAACCAAC
Lactobacillus fermentum IFO 3956 LAF_0401 -90 5.2 GTTAGTTTTTATCAGCAACTAAC
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0128 -87 5.6 GTTAGTTGGTTGCGTAAATAAAC
-83 5.7 GTTGGTTGCGTAAATAAACTAAC
Position: -269
Score: 5.2
Sequence: GTTAGTTGCTGATAAAAACTAAC
Position: -53
Score: 5.1
Sequence: GTTAGTTGTTTTAAAAAACCAAT
Locus tag: LAF_0402
LAF_0402 -269 5.2 GTTAGTTGCTGATAAAAACTAAC
-53 5.1 GTTAGTTGTTTTAAAAAACCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylA
Ortholog function: Xylose isomerase (EC 5.3.1.5)
Lactobacillus brevis ATCC 367 LVIS_0183 -42 5.7 GTTGGTTGTCGCAACGAACTAAC
Lactobacillus fermentum IFO 3956 LAF_0402 -53 5.1 GTTAGTTGTTTTAAAAAACCAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0130 -59 5.8 GTTGGTTGGTGTAACCAACTATG
Pediococcus pentosaceus ATCC 25745 PEPE_0187 -66 5.1 GTTTGTAAATAGAACTAACAAAC
Position: -121
Score: 5.5
Sequence: GTTTGTTTACTAAATAAACTAAC
Locus tag: LAF_0405
LAF_0405 -121 5.5 GTTTGTTTACTAAATAAACTAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: xynB2
Ortholog function: Beta-xylosidase (EC 3.2.1.37)
Lactobacillus fermentum IFO 3956 LAF_0405 -121 5.5 GTTTGTTTACTAAATAAACTAAC
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