Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CodY regulog to Bacillus sp. SG-1

Reference regulog properties
Source regulog: CodY - Bacillales
Regulator type: Transcription factor
Regulator family: CodY
Regulation mode:
Biological process: Amino acid metabolism
Effector: Guanosine triphosphate; Branched-chain amino acids
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus sp. SG-1
Orthologous TF(s) BSG1_18555
Regulated genes 43
Built upon 445 sites [see more]
Predicted regulatory interactions in Bacillus sp. SG-1
Locus tag Position Score Sequence
Position: -147
Score: 4.6
Sequence: AATATTAATAAAATT
Locus tag: BSG1_16510
BSG1_16510 -147 4.6 AATATTAATAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: oppA
Ortholog function: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
Anoxybacillus flavithermus WK1 Aflv_2133 -102 4.6 AAATGTTAGAAAATT
Position: -55
Score: 4.8
Sequence: AATATTATAAAAATT
Locus tag: BSG1_10213
BSG1_10213 -55 4.8 AATATTATAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ytcI
Ortholog function: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
Bacillus pumilus SAFR-032 BPUM_2600 -158 4.6 AATAGTTTGAATATT
Bacillus cereus ATCC 14579 BC4645 -58 4.7 AATTAACTGAAAATT
Oceanobacillus iheyensis HTE831 OB2643 -96 4.5 TATAATCAGAATATT
Position: -176
Score: 4.8
Sequence: TATTTTCTGAATATA
Locus tag: BSG1_10288
BSG1_10288 -176 4.8 TATTTTCTGAATATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ackA
Ortholog function: Acetate kinase (EC 2.7.2.1)
Bacillus subtilis subsp. subtilis str. 168 BSU29470 -182 4 atgTgTCtGAaAata
Bacillus amyloliquefaciens FZB42 RBAM_026400 -172 4.6 ATTTATCAGAAAATA
Bacillus pumilus SAFR-032 BPUM_2579 -206 4.7 ATTATTCAGAAAATA
Bacillus licheniformis DSM 13 BLi03086 -194 4.8 TATATTCAGAAAATA
Position: -290
Score: 4.3
Sequence: ATTTTTCTGATAAAA
Position: -241
Score: 4.3
Sequence: AAAAGTCAGATAATT
Locus tag: BSG1_10428
BSG1_10428 -290 4.3 ATTTTTCTGATAAAA
-241 4.3 AAAAGTCAGATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: citZ
Ortholog function: Citrate synthase (si) (EC 2.3.3.1)
Bacillus subtilis subsp. subtilis str. 168 BSU29140 -224 4.3 AAATGTCTGATTATT
Bacillus amyloliquefaciens FZB42 RBAM_026180 -224 4.2 ATTAATCAGATTATT
Bacillus pumilus SAFR-032 BPUM_2556 -210 4.3 AAATGTCTGATTATT
Bacillus licheniformis DSM 13 BLi03062 -225 4.5 AAATGTCTGATAATT
Anoxybacillus flavithermus WK1 Aflv_0504 -209 4.3 AAAAGTCTGATAATT
Geobacillus kaustophilus HTA426 GK2736 -201 4.3 AAAAGTCTGATAATT
Oceanobacillus iheyensis HTE831 OB2168 -222 4.3 AAATATTAAAAAATT
Position: -155
Score: 4.8
Sequence: AATATTCAGAATAAT
Locus tag: BSG1_20540
BSG1_20540 -155 4.8 AATATTCAGAATAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dppB
Ortholog function: Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)
Bacillus halodurans C-125 BH0029 -46 4.5 ATTTGTCAAAATATT
Oceanobacillus iheyensis HTE831 OB3068 -112 4.5 TATTTTTACAAAATT
Position: -105
Score: 4.4
Sequence: TTTTTTCAAAAAATA
Locus tag: BSG1_07676
BSG1_07676 -105 4.4 TTTTTTCAAAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: spo0A
Ortholog function: Stage 0 sporulation two-component response regulator (Spo0A)
Bacillus pumilus SAFR-032 BPUM_2154 -111 4.4 ATTATTCGGAAAATT
Anoxybacillus flavithermus WK1 Aflv_0953 -120 4.6 TATTTTATGAAAAAT
Geobacillus kaustophilus HTA426 GK2387 -96 4.7 TATTTTTTGAAAAAT
Bacillus cereus ATCC 14579 BC4170 -84 4.7 AATTTTCACACAATT
Bacillus halodurans C-125 BH2773 -89 5 AATTTTTTTAAAATT
Position: -310
Score: 4.4
Sequence: AAAATTCAGAAAAGT
Position: -150
Score: 4.5
Sequence: AATAGTAAAAAAATT
Locus tag: BSG1_14388
BSG1_14388 -310 4.4 AAAATTCAGAAAAGT
-150 4.5 AATAGTAAAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: putC
Ortholog function: Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Bacillus subtilis subsp. subtilis str. 168 BSU03210 -106 4.1 AATAATCAGAATCTT
-89 4.5 TATTTTGAGAATATT
Bacillus amyloliquefaciens FZB42 RBAM_003450 -23 4.8 TATTTTTAGAATATT
Bacillus licheniformis DSM 13 BLi00374 -155 4.3 AAGTTTCTGAAAAAA
Bacillus cereus ATCC 14579 BC0344 -121 4.6 TATATTTTAAAAATT
-102 4.6 AATTTTTAAAATATA
Position: -103
Score: 5.2
Sequence: AATTTTCTGAAAAAT
Position: -76
Score: 4.3
Sequence: AAATTTTGGAAAATT
Locus tag: BSG1_09523
BSG1_09523 -103 5.2 AATTTTCTGAAAAAT
-76 4.3 AAATTTTGGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: comK
Ortholog function: Competence transcription factor
Bacillus subtilis subsp. subtilis str. 168 BSU10420 -225 4.5 AATTTTTAGACAACT
Bacillus amyloliquefaciens FZB42 RBAM_010600 -88 4.2 TATATTCAAAAAAAA
Bacillus pumilus SAFR-032 BPUM_0978 -222 5 AATTTTTAGACAATT
Bacillus licheniformis DSM 13 BLi01119 -205 5.3 AATTTTTAGAAAATT
Oceanobacillus iheyensis HTE831 OB1177 -94 4.5 TTTATTCTAAAAATT
Position: -43
Score: 4.4
Sequence: AATTTTCATAATAAA
Locus tag: BSG1_09698
BSG1_09698 -43 4.4 AATTTTCATAATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhaA
Ortholog function: N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14)
Bacillus subtilis subsp. subtilis str. 168 BSU10070 -57 4.4 AATATTCAGACTTTT
Bacillus amyloliquefaciens FZB42 RBAM_010310 -57 4.2 AATCTTCTGACATTT
Bacillus pumilus SAFR-032 BPUM_0954 -58 4.2 AAGATTCTAACAATT
Bacillus licheniformis DSM 13 BLi01088 -50 4.9 AATTGTCATAAAATT
Oceanobacillus iheyensis HTE831 OB1157 -58 4.3 AATTATATGAATAAT
Position: -81
Score: 4.3
Sequence: AATAGATTGAAAATT
Locus tag: BSG1_15163
BSG1_15163 -81 4.3 AATAGATTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: oppB
Ortholog function: Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
Bacillus pumilus SAFR-032 BPUM_1071 -38 4.4 AATATACAGAAAAGT
Anoxybacillus flavithermus WK1 Aflv_2132 -102 4.6 AAATGTTAGAAAATT
Bacillus cereus ATCC 14579 BC1180 -65 4.4 TATTTTAAAAAAATA
Position: -114
Score: 4.6
Sequence: AATTTTCAAAAAACA
Locus tag: BSG1_20925
BSG1_20925 -114 4.6 AATTTTCAAAAAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pta
Ortholog function: Phosphate acetyltransferase (EC 2.3.1.8)
Bacillus cereus ATCC 14579 BC5387 -124 4.9 AATTTTATGAAAATA
Bacillus halodurans C-125 BH3823 -114 4.6 AATTTTATAAAAAAT
Position: -83
Score: 4.6
Sequence: ATTTTTCAAAAAAAT
Locus tag: BSG1_17370
BSG1_17370 -83 4.6 ATTTTTCAAAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: spoVG
Ortholog function: Stage V sporulation protein G required for spore cortex synthesis
Bacillus subtilis subsp. subtilis str. 168 BSU00490 -98 4.4 TTTTTTCAAAAAATA
Geobacillus kaustophilus HTA426 GK0042 -96 4.6 AATTTATAAAAAATT
Bacillus cereus ATCC 14579 BC0053 -87 5.1 AATTTTTAAAAAATT
Position: -34
Score: 5
Sequence: AATTTTCTAACAATT
Locus tag: BSG1_17755
BSG1_17755 -34 5 AATTTTCTAACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lcfA
Ortholog function: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Anoxybacillus flavithermus WK1 Aflv_0564 -56 4.8 AAATTTCAGAAAATA
Bacillus cereus ATCC 14579 BC4526 -277 4.4 AAAAGTCAGAATATT
Oceanobacillus iheyensis HTE831 OB2122 -67 4.4 AAAATTCAAAAAATA
Position: -25
Score: 5
Sequence: AATTATCTAAAAATT
Locus tag: BSG1_18950
BSG1_18950 -25 5 AATTATCTAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: liuR
Ortholog function: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Anoxybacillus flavithermus WK1 Aflv_1279 -25 4.9 AAAATTCAGAAAATT
Geobacillus kaustophilus HTA426 GK1490 -36 4.7 AAAATTCAGAATATT
Position: -88
Score: 4.4
Sequence: AATTATTTTACAATT
Locus tag: BSG1_18015
BSG1_18015 -88 4.4 AATTATTTTACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: slp
Ortholog function: Peptidoglycan-associated protein
Bacillus subtilis subsp. subtilis str. 168 BSU14620 -95 4.4 AATTATATAACAATT
Bacillus amyloliquefaciens FZB42 RBAM_014460 -115 4.4 AATTATATAACAATT
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