Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of DtxR regulog to Corynebacterium amycolatum SK46

Reference regulog properties
Source regulog: DtxR - Corynebacteriaceae
Regulator type: Transcription factor
Regulator family: DtxR
Regulation mode: repressor, activator
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Actinobacteria
Propagated regulon:
Target genome Corynebacterium amycolatum SK46
Orthologous TF(s) CORAM0001_0872
Regulated genes 8
Built upon 139 sites [see more]
Predicted regulatory interactions in Corynebacterium amycolatum SK46
Locus tag Position Score Sequence
Position: -74
Score: 4.1
Sequence: ATAGGCAAGGCCTGGCTTA
Locus tag: CORAM0001_0900
CORAM0001_0900 -74 4.1 ATAGGCAAGGCCTGGCTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ftn
Ortholog function: Ferritin
Corynebacterium amycolatum SK46 CORAM0001_0900 -74 4.1 ATAGGCAAGGCCTGGCTTA
Corynebacterium aurimucosum ATCC 700975 cauri_0076 -121 4.6 TTGGGTTAGGTAAACCTAC
Corynebacterium diphtheriae NCTC 13129 DIP1866 -56 4.5 TTATGCTGGGCTATCTTAA
Corynebacterium efficiens YS-314 CE2420 -56 4.1 TTATGGTGCGCTAACCTTG
Corynebacterium glutamicum ATCC 13032 cg2782 -56 4.4 TTATGCTGCGCTAACCTAT
Position: -81
Score: 3.8
Sequence: TTAGGCATGCCTAAGAGTA
Locus tag: CORAM0001_0848
CORAM0001_0848 -81 3.8 TTAGGCATGCCTAAGAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: Ferrous iron transport protein A
Corynebacterium amycolatum SK46 CORAM0001_0848 -81 3.8 TTAGGCATGCCTAAGAGTA
Corynebacterium aurimucosum ATCC 700975 cauri_0507 -67 3.8 TTTACTAAGGGTACCCTAT
Corynebacterium urealyticum DSM 7109 cur_1149 -115 4.5 TAAGGTTAGCCTTAGTAAA
Position: -150
Score: 5.1
Sequence: ATAGGCAAGGCAAGCCTAA
Locus tag: CORAM0001_0780
CORAM0001_0780 -150 5.1 ATAGGCAAGGCAAGCCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: xerC
Ortholog function: Tyrosine recombinase
Corynebacterium amycolatum SK46 CORAM0001_0780 -150 5.1 ATAGGCAAGGCAAGCCTAA
Corynebacterium diphtheriae NCTC 13129 DIP1510 -214 4.1 AAAGGCAAGCCTAAGTAAA
Corynebacterium efficiens YS-314 CE1917 -221 4.4 GTGGGTGAGGCAAGCCTAA
Corynebacterium glutamicum ATCC 13032 cg2224 -112 4 GTGTGTGAGGCAAGCCTAA
Position: -105
Score: 5
Sequence: TAAGGTAAGGCGTGCCTAA
Locus tag: CORAM0001_0629
CORAM0001_0629 -105 5 TAAGGTAAGGCGTGCCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: irp6A
Ortholog function: Ferrichrome ABC transporter, substrate-binding protein (TC 3.A.1.14.3)
Corynebacterium amycolatum SK46 CORAM0001_0629 -105 5 TAAGGTAAGGCGTGCCTAA
Corynebacterium diphtheriae NCTC 13129 DIP0108 -73 4.2 TTTTCTTTGCCTAGCCTAA
-48 4.3 TATAGTAAGCCTTGCCTCA
Corynebacterium jeikeium K411 jk0561 -93 4.1 TATAGTTAGCCTACCCTCG
-72 4.4 ACTGGCAAGGCTAAGCTAA
Position: -17
Score: 4.7
Sequence: TTAGGCTAGCCTGCCCTTT
Locus tag: CORAM0001_1990
CORAM0001_1990 -17 4.7 TTAGGCTAGCCTGCCCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: irp1A
Ortholog function: Predicted lipoprotein
Corynebacterium amycolatum SK46 CORAM0001_1990 -17 4.7 TTAGGCTAGCCTGCCCTTT
Corynebacterium efficiens YS-314 CE0687 -57 3.9 GTTGGACACCCTAACCTAA
Corynebacterium glutamicum ATCC 13032 cg0771 -59 4.6 GTCGGGCAGCCTAACCTAA
Position: -165
Score: 5.6
Sequence: TAAGGATAGGCTAACCTAG
Locus tag: CORAM0001_1805
CORAM0001_1805 -165 5.6 TAAGGATAGGCTAACCTAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmuT
Ortholog function: Heme ABC transporter, substrate-binding protein
Corynebacterium amycolatum SK46 CORAM0001_1805 -165 5.6 TAAGGATAGGCTAACCTAG
Position: -117
Score: 4.5
Sequence: ATAGGGAATCCTAAGCTAA
Locus tag: CORAM0001_1939
CORAM0001_1939 -117 4.5 ATAGGGAATCCTAAGCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: feuS
Ortholog function: Petrobactin ABC transporter, substrate-binding protein
Corynebacterium amycolatum SK46 CORAM0001_1939 -117 4.5 ATAGGGAATCCTAAGCTAA
-92 4.1 GCAGGTAATGATTACCTAA
Corynebacterium aurimucosum ATCC 700975 cauri_0741 -83 4.8 GAAGGTAAGCCTTACTTGA
-33 4.5 TGTGGTTAGCCACACCTAA
Corynebacterium efficiens YS-314 CE0881 -80 4.8 AAAGGTTTGGCTAAGTTAA
-40 3.9 TTTAGGTACCCTAACCTCA
Corynebacterium glutamicum ATCC 13032 cg0924 -123 4.5 AAAGGTTTGGCTTGGTTAA
-83 4.2 TTTAGGTAACCTAACCTCA
Corynebacterium jeikeium K411 jk1887 -86 4.8 TTAAGCAAGGCTTGACTAA
-51 4.5 TAAGGTTCGGCTAACTGTA
Position: -85
Score: 5.2
Sequence: TTGTGTTAGGCTTACCTAA
Locus tag: CORAM0001_1958
CORAM0001_1958 -85 5.2 TTGTGTTAGGCTTACCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cg1405
Ortholog function: hypothetical protein
Corynebacterium amycolatum SK46 CORAM0001_1958 -85 5.2 TTGTGTTAGGCTTACCTAA
Corynebacterium aurimucosum ATCC 700975 cauri_2060 -81 5.2 GTATGTTAGCCTTACCTAA
Corynebacterium efficiens YS-314 CE1346 -42 4.5 AGAGTGTAGGCTTACCTAT
Corynebacterium glutamicum ATCC 13032 cg1405 -52 4.9 TTTTGTTAGGCTTGCCTAG
Corynebacterium urealyticum DSM 7109 cur_1524 -79 5.2 TTGTGTTAGCCTAACCTAA
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