Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of DVUA0100 regulog to Desulfovibrio vulgaris str. DP4

Reference regulog properties
Source regulog: DVUA0100 - Desulfovibrionales
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator
Biological process:
Effector:
Phylum: Proteobacteria/delta
Propagated regulon:
Target genome Desulfovibrio vulgaris str. DP4
Orthologous TF(s) Dvul_3012
Regulated genes 2
Built upon 18 sites [see more]
Predicted regulatory interactions in Desulfovibrio vulgaris str. DP4
Locus tag Position Score Sequence
Position: -172
Score: 5
Sequence: GACAACGATGTTGGC
Locus tag: Dvul_3003
Dvul_3003 -172 5 GACAACGATGTTGGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: DvMF_2420
Ortholog function: hypothetical protein
Desulfovibrio vulgaris Hildenborough null -204 4.5 GCCAACAACACTGCC
-172 5.4 GGCAACGATGTTGGC
Desulfovibrio piger ATCC 29098 DESPIG_00690 -254 4.2 GCAAACACCATTGCC
-119 4.5 ATCAAAAATGTTGGC
Position: -232
Score: 4.4
Sequence: TGCAACGTTGTTGTC
Locus tag: Dvul_3004
Dvul_3004 -232 4.4 TGCAACGTTGTTGTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: DVUA0106
Ortholog function: Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) / Type III secretion outermembrane negative regulator of secretion (TyeA)
Desulfovibrio vulgaris Hildenborough DVUA0106 -549 5.4 GCCAACATCGTTGCC
-517 4.5 GGCAGTGTTGTTGGC
-227 4.3 TGCAACGTTGTTGCT
Desulfovibrio vulgaris str. Miyazaki F DvMF_2419 -437 4.2 GGCAACGACCTTGCC
-422 4.8 TCCAACAACGTTAGC
-402 4.1 GACAATGATGTTGCA
-177 4.1 GTCAACCGTTTTGCC
Desulfovibrio piger ATCC 29098 DESPIG_00689 -216 4.5 GCCAACATTTTTGAT