Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NsrR regulog to Shewanella frigidimarina NCIMB 400

Reference regulog properties
Source regulog: NsrR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Nitrosative stress response
Effector: Nitric oxide
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella frigidimarina NCIMB 400
Orthologous TF(s) Sfri_4024
Regulated genes 4
Built upon 51 sites [see more]
Predicted regulatory interactions in Shewanella frigidimarina NCIMB 400
Locus tag Position Score Sequence
Position: -26
Score: 5.2
Sequence: AGATGCACATAAAATACATGT
Position: -11
Score: 5
Sequence: ACATGTAAATTATGTGCACCT
Locus tag: Sfri_0450
Sfri_0450 -26 5.2 AGATGCACATAAAATACATGT
-11 5 ACATGTAAATTATGTGCACCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dnrN
Ortholog function: Nitric oxide-dependent regulator DnrN or NorA
Shewanella oneidensis MR-1 SO_4302 -126 5.6 AGCTGCAAATAATATGCATGT
Shewanella putrefaciens CN-32 Sputcn32_3576 -49 5.5 AGCTGCAAATAATATGAATGT
Shewanella sp W3-18-1 Sputw3181_3715 -49 5.5 AGCTGCAAATAATATGAATGT
Shewanella sp ANA-3 Shewana3_0397 -49 5.6 AGCTGCAAATATTATGCATGT
Shewanella sp MR-4 Shewmr4_0398 -49 5.6 AGCTGCAAATATTATGCATGT
Shewanella sp MR-7 Shewmr7_3627 -49 5.6 AGCTGCAAATATTATGCATGT
Shewanella baltica OS155 Sbal_3989 -48 5.7 AGATGCAAATAATATGAATGT
Shewanella frigidimarina NCIMB 400 Sfri_0450 -26 5.2 AGATGCACATAAAATACATGT
Shewanella amazonensis SB2B Sama_3236 -34 4.6 ACATGCATACAGATTGCAGCT
Shewanella pealeana ATCC 700345 Spea_0383 -60 5.9 AGATGCAAATAATATGCATGT
Shewanella piezotolerans WP3 swp_0412 -46 5.1 AGATGCAAATAATATACTTGT
Shewanella sediminis HAW-EB3 Ssed_4124 -32 4.8 AGATATAAATAATTTGCAGCT
Shewanella woodyi ATCC 51908 Swoo_0492 -33 4.9 ACATGCAAATACAAAGCAGCT
Position: -64
Score: 5.6
Sequence: AGATTTATATATTATGCATGT
Locus tag: Sfri_3037
Sfri_3037 -64 5.6 AGATTTATATATTATGCATGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nnrS2
Ortholog function: NnrS protein involved in response to NO
Shewanella sp ANA-3 Shewana3_2362 -46 4.5 AAGTGCAATTATTATGAAGCT
Shewanella denitrificans OS217 Sden_2837 -110 4.4 ACAatCATtaTAaATaCcTGT
Shewanella frigidimarina NCIMB 400 Sfri_3037 -64 5.6 AGATTTATATATTATGCATGT
Shewanella pealeana ATCC 700345 Spea_1227 -35 4.8 AGCTGTATTTTAAATGCGTGT
Shewanella piezotolerans WP3 swp_3404 -39 4.2 AggTaCATtaAAaATaCcTGT
Position: -43
Score: 5
Sequence: ACATGTAAAACTTATACATGA
Locus tag: Sfri_3609
Sfri_3609 -43 5 ACATGTAAAACTTATACATGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Shewanella oneidensis MR-1 SO_1363 -42 5.2 ACATGTAAAAATAAAGCATGA
Shewanella putrefaciens CN-32 Sputcn32_1174 -42 5.5 ACATGCATAAATAAAGCATGA
Shewanella sp W3-18-1 Sputw3181_2990 -42 5.5 ACATGCATAAATAAAGCATGA
Shewanella sp ANA-3 Shewana3_3011 -42 5.4 ACATGCAAAAATAAAGCATGA
Shewanella sp MR-4 Shewmr4_2832 -42 5.4 ACATGCAAAAATAAAGCATGA
Shewanella sp MR-7 Shewmr7_2914 -42 5.4 ACATGCAAAAATAAAGCATGA
Shewanella baltica OS155 Sbal_1216 -42 5.2 ACATGTAAAAATAAAGCATGA
Shewanella frigidimarina NCIMB 400 Sfri_3609 -43 5 ACATGTAAAACTTATACATGA
Shewanella amazonensis SB2B Sama_0895 -83 4.5 TGCTGCTTTTTAAATGCAGCA
-40 5.5 ACATGCATAAATAAAGCATGA
Shewanella loihica PV-4 Shew_1069 -41 5.1 ACGTGCAAATAAAAAGCATGA
Shewanella pealeana ATCC 700345 Spea_1055 -43 5.6 ACATGTAAATAATATGCATGA
Shewanella halifaxensis HAW-EB4 Shal_1103 -13 5.6 ACATGTAAATAATATGCATGA
Shewanella piezotolerans WP3 swp_3762 41 5.9 AGATGCAAATTATATGCATGT
Shewanella sediminis HAW-EB3 Ssed_1165 -42 5.4 ACATGCAAATAAAAAGCATGA
Shewanella woodyi ATCC 51908 Swoo_1260 -42 5.4 ACATGCAAATAAAAAGCATGA
Position: -125
Score: 4.8
Sequence: ACCTTTATATAATTTATATGT
Locus tag: Sfri_3699
Sfri_3699 -125 4.8 ACCTTTATATAATTTATATGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmp
Ortholog function: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)
Shewanella sp ANA-3 Shewana3_3174 -33 5.6 ACATTCATAAATAAAGCATGT
Shewanella sp MR-4 Shewmr4_2996 -67 4.4 TGATCCAAATCAAATGAATCT
-33 4.7 ACATTCATAAATAAGGCGTGT
Shewanella sp MR-7 Shewmr7_3077 -67 4.4 TGATCCAAATCAAATGAATCT
-33 5.8 ACATTCATAAATAATGCATGT
Shewanella baltica OS155 Sbal_1014 -33 5.3 ACATTCATAATATTTACACGT
Shewanella frigidimarina NCIMB 400 Sfri_3699 -125 4.8 ACCTTTATATAATTTATATGT
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