Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of Fur regulog to Pseudoalteromonas haloplanktis TAC125

Reference regulog properties
Source regulog: Fur - Shewanellaceae
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor (activator)
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Proteobacteria
Propagated regulon:
Target genome Pseudoalteromonas haloplanktis TAC125
Orthologous TF(s) PSHAa1641
Regulated genes 13
Built upon 505 sites [see more]
Predicted regulatory interactions in Pseudoalteromonas haloplanktis TAC125
Locus tag Position Score Sequence
Position: -62
Score: 5.5
Sequence: AAATGATACTGGTTTTCATTA
Locus tag: PSHAa0108
PSHAa0108 -62 5.5 AAATGATACTGGTTTTCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4743
Ortholog function: TonB-dependent siderophore receptor
Shewanella oneidensis MR-1 SO4743 -116 5.7 AAATAAAAACAATTCTTATTT
Shewanella putrefaciens CN-32 Sputcn32_3953 -68 5.6 AAATAAAAACACTTCTCATTT
Shewanella sp W3-18-1 Sputw3181_4050 -68 5.6 AAATAAAAACACTTCTCATTT
Shewanella sp ANA-3 Shewana3_4127 -68 5.7 AAATAAAAACAATTCTTATTT
Shewanella sp MR-4 Shewmr4_3922 -68 5.7 AAATAAAAACAATTCTTATTT
Shewanella sp MR-7 Shewmr7_4014 -68 5.7 AAATAAAAACAATTCTTATTT
Shewanella baltica OS155 Sbal_4363 -68 5.6 AAATAAAAACACTTCTCATTT
Shewanella frigidimarina NCIMB 400 Sfri_4042 -68 5.4 AAATGGAAACGCTTCTCATTT
Shewanella amazonensis SB2B Sama_3641 -73 5.9 AAATGCTAATCATTATCAATT
Shewanella loihica PV-4 Shew_3841 -69 6 AAATAAAAACAATTCTCATTT
Shewanella pealeana ATCC 700345 Spea_4236 -69 6 AAATAAAAATAGTTCTCATTT
Shewanella halifaxensis HAW-EB4 Shal_4287 -68 6 AAATAAAAATAGTTCTCATTT
Shewanella piezotolerans WP3 swp_5150 -68 5.6 GAATAAAAACAATTCTCATTT
Shewanella sediminis HAW-EB3 Ssed_4483 -66 6 AAATAAAAACGATTCTCATTT
Shewanella woodyi ATCC 51908 Swoo_4894 -67 6.2 AAATAAAAATAATTCTCATTT
Position: -65
Score: 5.6
Sequence: AATTGCAAATCAATATCATTT
Locus tag: PSHAa0695
PSHAa0695 -65 5.6 AATTGCAAATCAATATCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sden_3064
Ortholog function: TonB-dependent receptor
Shewanella putrefaciens CN-32 Sputcn32_0603 -91 5.1 AAATAACAATAACTATCATTA
Shewanella putrefaciens CN-32 Sputcn32_0603 -91 5.1 AAATAACAATAACTATCATTA
Shewanella sp W3-18-1 Sputw3181_3569 -91 5.1 AAATAACAATAACTATCATTA
Shewanella sp W3-18-1 Sputw3181_3569 -91 5.1 AAATAACAATAACTATCATTA
Shewanella denitrificans OS217 Sden_3064 -122 6.2 AAATAATAATGATTATCATTT
Shewanella denitrificans OS217 Sden_3064 -122 6.2 AAATAATAATGATTATCATTT
Shewanella frigidimarina NCIMB 400 Sfri_3717 -90 5.7 AAATGATAATGATTTCTATTT
Shewanella frigidimarina NCIMB 400 Sfri_2549 -195 5 GATTGATAACGAATCTCAATA
-168 5.5 GAGTGATAATTATTATCAATT
-91 5.6 TAATGATAATCATTAGCAATA
Shewanella frigidimarina NCIMB 400 Sfri_3717 -90 5.7 AAATGATAATGATTTCTATTT
Shewanella frigidimarina NCIMB 400 Sfri_2549 -195 5 GATTGATAACGAATCTCAATA
-168 5.5 GAGTGATAATTATTATCAATT
-91 5.6 TAATGATAATCATTAGCAATA
Shewanella loihica PV-4 Shew_3097 -136 5.9 AAATGATAACCATTCCCATTT
Shewanella loihica PV-4 Shew_3097 -136 5.9 AAATGATAACCATTCCCATTT
Position: -32
Score: 5.3
Sequence: TATTGATAATAGTTATTATTC
Locus tag: PSHAa2663
PSHAa2663 -32 5.3 TATTGATAATAGTTATTATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fbpA
Ortholog function: ABC iron(III) transporter, periplasmic ligand-binding subunit, FbpA
Shewanella oneidensis MR-1 SO0744 -76 5.7 AACTGATAACTATTATCATTA
Shewanella putrefaciens CN-32 Sputcn32_3227 -74 5.8 AAGTGATAACTATTATCATTA
Shewanella sp W3-18-1 Sputw3181_0714 -74 5.8 AAGTGATAACTATTATCATTA
Shewanella sp ANA-3 Shewana3_3517 -76 5.7 AACTGATAACTATTATCATTA
Shewanella sp MR-4 Shewmr4_3347 -76 5.7 AACTGATAACTATTATCATTA
Shewanella sp MR-7 Shewmr7_0606 -76 5.7 AACTGATAACTATTATCATTA
Shewanella baltica OS155 Sbal_0812 -76 5.4 AACTGATAAGCATTATCATTA
Shewanella frigidimarina NCIMB 400 Sfri_0636 -67 5.9 AATTGATAACCATTATCAATT
Shewanella amazonensis SB2B Sama_0666 -57 5.8 TAGTGATAATAATTATCATTA
Shewanella loihica PV-4 Shew_0861 -41 6.1 AATTGATAATTATTATCATTA
Shewanella pealeana ATCC 700345 Spea_0844 -60 5.8 AATTGAGAATTATTATCAGTT
Shewanella halifaxensis HAW-EB4 Shal_0897 -64 5.4 AATTGAGAATTATTATCAGTC
Shewanella piezotolerans WP3 swp_4107 -60 5.2 AATTGAGAACTATTATCAGCA
Shewanella sediminis HAW-EB3 Ssed_0945 -58 5.7 GATTGATAATAATTATCATTA
Shewanella woodyi ATCC 51908 Swoo_0996 -57 5.4 AATTGATAACTATTATCATCG
Position: -49
Score: 5
Sequence: TAATACAAATCATTATCATGT
Locus tag: PSHAa2970
PSHAa2970 -49 5 TAATACAAATCATTATCATGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1188
Ortholog function: Inner membrane protein with PepSY TM helix
Shewanella oneidensis MR-1 SO1188 -185 5.4 TTTTGATAATAAATATCATTT
Shewanella putrefaciens CN-32 Sputcn32_2850 -93 5.2 GTTTGATAATAAATATCATTT
Shewanella sp W3-18-1 Sputw3181_1054 -93 5.2 GTTTGATAATAAATATCATTT
Shewanella sp ANA-3 Shewana3_1014 -181 5.6 TGTTGATAATAAATATCATTT
Shewanella sp MR-4 Shewmr4_1010 -181 5.6 TGTTGATAATAAATATCATTT
Shewanella sp MR-7 Shewmr7_1075 -181 5.6 TGTTGATAATAAATATCATTT
Shewanella baltica OS155 Sbal_3255 -45 5.4 ATTTGATAATCGATCTCATTT
Shewanella denitrificans OS217 Sden_2152 -58 5.8 TATTGAGATTCATTATCATTT
Shewanella amazonensis SB2B Sama_2808 -73 4.8 TGGTGAGAATTACTCTCAATT
Shewanella piezotolerans WP3 swp_3069 -102 4.3 TGATCATAATTGTTTTAAATC
Position: -47
Score: 5.9
Sequence: AAATGCTAATCATTATCAATT
Locus tag: PSHAb0251
PSHAb0251 -47 5.9 AAATGCTAATCATTATCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: irgA
Ortholog function: TonB-dependent receptor
Shewanella oneidensis MR-1 SO_4523 -50 6.1 TATTGAAAATTATTATCATTT
Shewanella putrefaciens CN-32 Sputcn32_3503 -52 5.9 TATTGAAAATTGTTCTCATTT
Shewanella sp W3-18-1 Sputw3181_0403 -52 5.9 TATTGAAAATTGTTCTCATTT
Shewanella sp ANA-3 Shewana3_3929 -49 6.1 TATTGAAAATTATTATCATTT
Shewanella baltica OS155 Sbal_0217 -52 5.9 TATTGAAAATTGTTCTCATTT
Position: -49
Score: 5.2
Sequence: TATTGTTAATAGTTATCATTA
Locus tag: PSHAb0286
PSHAb0286 -49 5.2 TATTGTTAATAGTTATCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4423.1
Ortholog function: TonB-dependent ferric achromobactin receptor
Shewanella oneidensis MR-1 SO4423.1 -98 5.4 TAATAAAAATCGTTACCATTT
Shewanella putrefaciens CN-32 Sputcn32_0401 -97 5.6 TAACGAAAATCGTTATCATTT
Shewanella sp W3-18-1 Sputw3181_0255 -97 5.6 TAACGAAAATCGTTATCATTT
Shewanella sp ANA-3 Shewana3_0286 -98 5.5 CAATAAAAATCGTTATCATTT
Shewanella sp MR-4 Shewmr4_0286 -98 5.5 CAATAAAAATCGTTATCATTT
Shewanella sp MR-7 Shewmr7_3733 -98 5.5 CAATAAAAATCGTTATCATTT
Shewanella baltica OS155 Sbal_0298 -100 5.6 GAATAAAAATCGTTATCATTT
Shewanella frigidimarina NCIMB 400 Sfri_0392 -54 5.9 TAATGATAATGAATATCATTA
Shewanella amazonensis SB2B Sama_1394 -54 5 CATTGAGAGTAATTATCATTA
Shewanella loihica PV-4 Shew_1688 -72 4.9 ATATGATAATCTATATCATTC
Shewanella pealeana ATCC 700345 Spea_0977 -108 5.3 AAACACTAATCATTATCATTT
Shewanella piezotolerans WP3 swp_1134 -108 5.2 CAACAATAATCATTATCATTT
Shewanella sediminis HAW-EB3 Ssed_1496 -51 4.9 AATCGAGAATGGTTATCATCC
Shewanella woodyi ATCC 51908 Swoo_0587 -62 5.9 TAATGGGAATAATTATCATTT
Position: -55
Score: 5.2
Sequence: TAACGATAACCATTATCATTC
Position: -22
Score: 4.8
Sequence: AAATACGAATACTTACCATTA
Locus tag: PSHAb0512
PSHAb0512 -55 5.2 TAACGATAACCATTATCATTC
-22 4.8 AAATACGAATACTTACCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1482
Ortholog function: TonB-dependent receptor
Shewanella oneidensis MR-1 SO1482 -49 5 GGATGGAAATCATTATCATTC
Shewanella putrefaciens CN-32 Sputcn32_1237 -49 4.7 AAATACAAATCATTACTATTC
Shewanella sp W3-18-1 Sputw3181_2867 -49 4.7 AAATACAAATCATTACTATTC
Shewanella sp ANA-3 Shewana3_2944 -48 5.8 AGATGAAAATCATTATCATTC
Shewanella sp MR-4 Shewmr4_2768 -48 5.8 AGATGAAAATCATTATCATTC
Shewanella sp MR-7 Shewmr7_2846 -48 5.8 AGATGAAAATCATTATCATTC
Shewanella baltica OS155 Sbal_1315 -49 5 AAATGCAAATCATTACTATTC
Shewanella denitrificans OS217 Sden_1445 -48 5.2 CTATGATAATCATTATCATTC
Shewanella frigidimarina NCIMB 400 Sfri_2440 -52 5.6 TTATGATAATCATTATCATTC
Shewanella loihica PV-4 Shew_2690 -51 6 TATTGATAATCGTTATCATTT
Shewanella pealeana ATCC 700345 Spea_2930 -51 6 TAATGATAATCGTTATCATCT
Shewanella halifaxensis HAW-EB4 Shal_3021 -51 5.6 TAATAAGAATCGTTATCATCT
Shewanella piezotolerans WP3 swp_3568 -51 5.8 TAATGATAATGGTTATCATCA
Shewanella sediminis HAW-EB3 Ssed_3242 -49 5.5 AAATGCAAATCGTTATCATTC
Shewanella woodyi ATCC 51908 Swoo_3375 -51 6 TAATGATAATCGTTATCATCT
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