Propagation of TyrR regulog to Pseudoalteromonas tunicata D2

Reference regulog properties
Source regulog:	TyrR - Shewanellaceae
Regulator type:	Transcription factor
Regulator family:	TyrR
Regulation mode:	activator
Biological process:	Amino acid utilization
Effector:	Tyrosine; Phenylalanine
Phylum:	Proteobacteria/gamma
Propagated regulon:
Target genome	Pseudoalteromonas tunicata D2
Orthologous TF(s)	PTD2_11554
Regulated genes	9

Built upon 312 sites [see more]

Predicted regulatory interactions in *Pseudoalteromonas tunicata D2*
	Locus tag	Position	Score	Sequence
Position: -128 Score: 4.6 Sequence: GTGGCAACATATCTTGGCAC Locus tag: PTD2_19752
	PTD2_19752	-128	4.6	GTGGCAACATATCTTGGCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ivdA
Ortholog function: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Shewanella oneidensis MR-1	SO_1677	-159	4.4	CTGTAAATCCTGACTGACAA
Shewanella putrefaciens CN-32	Sputcn32_1397	-167	4.3	CTGTAAATCCTTACTGACAA
Shewanella sp W3-18-1	Sputw3181_2704	-167	4.3	CTGTAAATCCTTACTGACAA
Shewanella sp ANA-3	Shewana3_2771	-159	4.4	CTGTAAATCCTGACTGACAA
Shewanella sp MR-4	Shewmr4_2597	-159	4.4	CTGTAAATCCTGACTGACAA
Shewanella sp MR-7	Shewmr7_2664	-159	4.4	CTGTAAATCCTGACTGACAA
Shewanella baltica OS155	Sbal_1495	-162	4.3	CTGTAAATCCTTACTGACAT
Shewanella denitrificans OS217	Sden_1943	-159	4.4	GTGTAAATCTTCAGTGACAA
Shewanella frigidimarina NCIMB 400	Sfri_1338	-140	4.1	CTGTAAATCTTCACTGACAA
Shewanella amazonensis SB2B	Sama_1375	-195	3.8	GTGTCAATCTCAGTTCCCGC
		-173	4.6	CTGTAAATCCAGAGTGACAA
Shewanella loihica PV-4	Shew_1667	-168	4.4	CTGTAAATTCAGCCTGACAA
Shewanella pealeana ATCC 700345	Spea_2783	-231	4.5	GTGTAAATTCTATGTGACAA
Shewanella halifaxensis HAW-EB4	Shal_2878	-231	4.4	GTGTAAATCCTTTGTGACAT
Shewanella piezotolerans WP3	swp_3387	-75	3.8	TTTTAAGTTGATGTTTACAC
Shewanella sediminis HAW-EB3	Ssed_1473	-185	4.5	CTGTAAATCCTGAGTGACAT
Shewanella woodyi ATCC 51908	Swoo_3202	-173	4.7	CTGTAAATCTTGAGTGACAT

Position: -183 Score: 4.6 Sequence: GTGCCAAGATATGTTGCCAC Locus tag: PTD2_19757
	PTD2_19757	-183	4.6	GTGCCAAGATATGTTGCCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: liuR
Ortholog function: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Shewanella oneidensis MR-1	SO_1898	-105	4.6	GTGGCAACAAGAATTGACAA
Shewanella putrefaciens CN-32	Sputcn32_1720	-108	4.5	ATGGCAATTGGGATTGACAC
Shewanella sp W3-18-1	Sputw3181_2305	-108	4.5	ATGGCAATTGGGATTGACAC
Shewanella sp ANA-3	Shewana3_1673	-105	4.6	GTGGCAACAAGAATTGACAA
Shewanella sp MR-4	Shewmr4_2321	-105	4.6	GTGGCAACAAGAATTGACAA
Shewanella sp MR-7	Shewmr7_2393	-105	4.6	GTGGCAACAAGAATTGACAA
Shewanella baltica OS155	Sbal_2827	-108	4.5	ATGGCAATTGGGATTGACAC
Shewanella denitrificans OS217	Sden_2244	-117	4.2	GTGGAAACAGAATTTAACAC
Shewanella frigidimarina NCIMB 400	Sfri_2726	-117	4.7	GTGGCAAGCAAAATTAACAC
Shewanella amazonensis SB2B	Sama_1363	-123	4.2	CTGTAAGCTAAGCCTGACAC
Shewanella pealeana ATCC 700345	Spea_2796	-111	4.4	GTGGCAAGCGCAATTGACAT
Shewanella halifaxensis HAW-EB4	Shal_2901	-110	4.4	GTGGCAAGCGCGATTGACAT
Shewanella piezotolerans WP3	swp_3441	-76	4.2	TTGGCACGCACAATTGACAT
Shewanella woodyi ATCC 51908	Swoo_3222	-129	4.5	CTGGAAAACTTACTTGCCAT

Position: -146 Score: 4.7 Sequence: TTGTAAACAAATAATTCCAA Locus tag: PTD2_15977
	PTD2_15977	-146	4.7	TTGTAAACAAATAATTCCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: phhA
Ortholog function: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Shewanella oneidensis MR-1	SO_1666	-122	4.4	TTGTAATATTTGCTTTACGT
Shewanella putrefaciens CN-32	Sputcn32_1386	-122	4.4	TTGTAATATTTGCTTTACGT
Shewanella sp W3-18-1	Sputw3181_2715	-122	4.4	TTGTAATATTTGCTTTACGT
Shewanella sp ANA-3	Shewana3_2781	-122	4.4	TTGTAATATTTGCTTTACGT
Shewanella sp MR-4	Shewmr4_2607	-122	4.4	TTGTAATATTTACTTTACGT
Shewanella sp MR-7	Shewmr7_2674	-122	4.4	TTGTAATATTTGCTTTACGT
Shewanella baltica OS155	Sbal_1484	-122	4.4	TTGTAATATTTGCTTTACGT
Shewanella denitrificans OS217	Sden_2595	-127	4.4	TTGTATGCTTAAGTTTACAA
Shewanella frigidimarina NCIMB 400	Sfri_1328	-121	4.1	TTGTATTTATTTGTTTACGA
Shewanella amazonensis SB2B	Sama_2222	-123	4.3	TTGTAATAAAAGCTTTACGA
Shewanella loihica PV-4	Shew_1435	-87	4.7	ATGTAAATTTGAGGTTACAT
Shewanella pealeana ATCC 700345	Spea_1448	-239	4.3	GTGTCAATTTCTATATACGC
		-173	4.8	GTGTAACATTAGCATTACAC
Shewanella halifaxensis HAW-EB4	Shal_1531	-133	4.3	GTGTAACAACTTCGTTACAC
Shewanella piezotolerans WP3	swp_1650	-188	4.6	CTGTAAATTATGGCTTACAA
		-123	4.5	ATGTAAACTTATGGTTACGC
Shewanella sediminis HAW-EB3	Ssed_2930	-188	3.7	TCGTCAATAAATGGTGACGA
		-122	4.2	TTGTAAGCAAATTGTTACAC
Shewanella woodyi ATCC 51908	Swoo_1715	-186	3.8	TTGGCAATAATTCAATACGA
		-121	4.6	GTGTAACTTTTTGGTTACAA

Position: -198 Score: 3.7 Sequence: CTGTCCGTCAAAATTGACAG Position: -164 Score: 3.8 Sequence: ATGTAAACAGATATTTCAAG Locus tag: PTD2_15987
	PTD2_15987	-198	3.7	CTGTCCGTCAAAATTGACAG
		-164	3.8	ATGTAAACAGATATTTCAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: pep3
Ortholog function: peptidase, M13 family
Shewanella oneidensis MR-1	SO_3844	-173	4.2	ATGGTAATTTTTAGTTACAA
Shewanella putrefaciens CN-32	Sputcn32_0791	-276	3.6	ATGTTAAGTTTATTTGCCTT
Shewanella sp W3-18-1	Sputw3181_3384	-276	3.6	ATGTTAAGTTTATTTGCCTT
Shewanella sp ANA-3	Shewana3_0759	-172	4.2	ATGGTAATTTTTAGTTACAA
Shewanella sp MR-4	Shewmr4_3179	-173	4.2	ATGGTAATTTTTAGTTACAA
Shewanella sp MR-7	Shewmr7_0787	-172	4.2	ATGGTAATTTTTAGTTACAA
Shewanella baltica OS155	Sbal_0685	-173	4	CTGGTAACCTTTAGTTACAT
Shewanella denitrificans OS217	Sden_1089	-224	3.8	TTGGTTACATAAATTGCCAG
Shewanella loihica PV-4	Shew_2973	-180	4.1	GAGGAAATCTTTACTTACAT
Shewanella pealeana ATCC 700345	Spea_3177	-237	3.8	TGGGAAACCTTTTCTTACAC
Shewanella halifaxensis HAW-EB4	Shal_3258	-202	3.9	TAGGAAACCTTTTCTTACAC
Shewanella piezotolerans WP3	swp_3866	-189	3.9	TAGGAAACCTTTTCTTACAC
Shewanella sediminis HAW-EB3	Ssed_3509	-218	4	AAGGAAACCTTTACTTACAC
Shewanella woodyi ATCC 51908	Swoo_0911	-178	3.7	AAGGAAACCTTTTCTTACAT

Position: -77 Score: 4.6 Sequence: TTGTAAAGCTTGCTTGACTT Position: -35 Score: 3.9 Sequence: GAGTCAAATAAACTTTACTT Locus tag: PTD2_05885
	PTD2_05885	-77	4.6	TTGTAAAGCTTGCTTGACTT
		-35	3.9	GAGTCAAATAAACTTTACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_3409
Ortholog function: hypothetical protein
Shewanella frigidimarina NCIMB 400	Sfri_3409	-99	4.7	AAGTAAAGCTTACTTGACAC
		-55	4.3	AAGTCAAGCTTAGTTGACAT
Shewanella loihica PV-4	Shew_3626	-90	4.4	ATGTAAAGCATGCTTGACCT
		-45	4.1	ATGTAAAGGGTGTTTGACAT
Shewanella pealeana ATCC 700345	Spea_0139	-106	3.9	AAGTAAAGCAAGCTTGACTT
		-62	4.2	AAGTCAAGCGTGCTTTACAT
Shewanella halifaxensis HAW-EB4	Shal_4179	-105	3.9	AAGTAAAGCATGCTTGACTT
		-61	4.5	AAGTCAAGCTTACTTTACAT
Shewanella piezotolerans WP3	swp_0181	-47	4.4	AAGTAAAGCTCACTTTACAA
Shewanella sediminis HAW-EB3	Ssed_4363	-111	3.9	AAGTAAAGCAAGCTTGACTT

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of TyrR regulog to Pseudoalteromonas tunicata D2

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --