Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of ArgR regulog to Alteromonadales bacterium TW-7

Reference regulog properties
Source regulog: ArgR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: ArgR
Regulation mode: repressor (activator)
Biological process: Arginine degradation; Arginine biosynthesis
Effector: Arginine
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Alteromonadales bacterium TW-7
Orthologous TF(s) ATW7_12338
Regulated genes 14
Built upon 502 sites [see more]
Predicted regulatory interactions in Alteromonadales bacterium TW-7
Locus tag Position Score Sequence
Position: -202
Score: 4.3
Sequence: ATTCAATTTAATTGCATA
Position: -192
Score: 3.8
Sequence: ATTGCATAACAATATAAA
Position: -165
Score: 5.1
Sequence: GATGAATATCAATTCACT
Position: -154
Score: 3.8
Sequence: ATTCACTTTTTAAGCATA
Position: -12
Score: 4
Sequence: AATGAGTAAATAATGAAT
Locus tag: ATW7_10718
ATW7_10718 -202 4.3 ATTCAATTTAATTGCATA
-192 3.8 ATTGCATAACAATATAAA
-165 5.1 GATGAATATCAATTCACT
-154 3.8 ATTCACTTTTTAAGCATA
-12 4 AATGAGTAAATAATGAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argC
Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Shewanella oneidensis MR-1 SO_0275 -327 3.6 ATTGAAATATTAAGTAGT
-249 4 TAAAAATATATATTCACA
-127 3.7 AGTGAATAAAATAACAAG
Shewanella putrefaciens CN-32 Sputcn32_3717 -192 4.2 TATGAAAATAAATTAAAA
-57 3.8 AGTGAATAAAATAACAAC
Shewanella sp W3-18-1 Sputw3181_3860 -193 4.2 TATGAAAATAAATTAAAA
-180 4 TAAAAATATATATTCACA
-57 4 AGTGAATAAAATAACAAT
Shewanella sp ANA-3 Shewana3_3905 -357 3.7 ACTGATTTTTCAGTCTTT
-327 4.4 ACTGAGTTATTAAGCAGT
-249 4 TAAAAATATATATTCACA
Shewanella sp MR-4 Shewmr4_3709 -327 4.4 ACTGAGTTATTAAGCAGT
-249 4 TAAAAATATATATTCACA
Shewanella sp MR-7 Shewmr7_0236 -327 4.4 ACTGAGTTATTAAGCAGT
-249 4 TAAAAATATATATTCACA
Shewanella baltica OS155 Sbal_4124 -471 4.2 ATTCAATATAAATGCGAA
-252 4 TAAAAATATATATTCACA
-130 3.8 AGTGAATAAAATAACAAC
Shewanella denitrificans OS217 Sden_0250 -235 4.3 AATAAATATGTATTCACA
-214 3.7 ATTGCATAACAATTTGAT
-145 4.3 ATCGAATATAAAAGCACA
Shewanella amazonensis SB2B Sama_0256 -241 3.7 AATAGATATTCATGCATA
Shewanella loihica PV-4 Shew_0202 -249 3.7 TAAAAATATCTATTCAAT
-228 3.5 ATTGCATAATTAGTTTGT
Shewanella pealeana ATCC 700345 Spea_0227 -266 3.8 CCCAAATATATATTCAAA
Shewanella halifaxensis HAW-EB4 Shal_4093 -267 4.5 CCTAAATATATATTCAAA
Shewanella piezotolerans WP3 swp_2055 -266 4.5 CCTAAATATATATTCAAA
Shewanella sediminis HAW-EB3 Ssed_4276 -256 4 GTAAAATATATATTCAAA
-235 3.5 ATTGCATAATTAGTTTGT
Shewanella woodyi ATCC 51908 Swoo_0329 -423 3.5 TTTGCATTCAAAACCAAG
-263 4 GTAAAATATATATTCAAA
Position: -85
Score: 3.8
Sequence: TATGCTTAAAAAGTGAAT
Position: -74
Score: 5.1
Sequence: AGTGAATTGATATTCATC
Position: -47
Score: 3.8
Sequence: TTTATATTGTTATGCAAT
Position: -37
Score: 4.3
Sequence: TATGCAATTAAATTGAAT
Locus tag: ATW7_10723
ATW7_10723 -85 3.8 TATGCTTAAAAAGTGAAT
-74 5.1 AGTGAATTGATATTCATC
-47 3.8 TTTATATTGTTATGCAAT
-37 4.3 TATGCAATTAAATTGAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argE
Ortholog function: Acetylornithine deacetylase (EC 3.5.1.16)
Shewanella amazonensis SB2B Sama_0255 -50 3.7 ACTCTTTAATTATGCAAT
Shewanella loihica PV-4 Shew_0201 -53 4.2 TATGCAATAATATTGAAT
Shewanella pealeana ATCC 700345 Spea_0226 -27 3.8 TTTGAATATATATTTGGG
Shewanella halifaxensis HAW-EB4 Shal_4094 -122 3.8 ATTGAACATATATACTCT
-26 4.5 TTTGAATATATATTTAGG
Shewanella piezotolerans WP3 swp_2054 -143 3.4 AATACTTAATAATTGAAC
-27 4.5 TTTGAATATATATTTAGG
Shewanella sediminis HAW-EB3 Ssed_4277 -48 3.5 ACAAACTAATTATGCAAT
-27 4 TTTGAATATATATTTTAC
Shewanella woodyi ATCC 51908 Swoo_0328 -28 4 TTTGAATATATATTTTAC
Position: -11
Score: 3.9
Sequence: AAGGATTTAACATGCATA
Locus tag: ATW7_03182
ATW7_03182 -11 3.9 AAGGATTTAACATGCATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0620
Ortholog function: Conserved hypothetical protein
Shewanella oneidensis MR-1 SO_0620 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAA
Shewanella putrefaciens CN-32 Sputcn32_0648 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAC
Shewanella sp W3-18-1 Sputw3181_3526 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAC
Shewanella sp ANA-3 Shewana3_0613 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAA
Shewanella sp MR-4 Shewmr4_0614 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAA
Shewanella sp MR-7 Shewmr7_3416 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAA
Shewanella baltica OS155 Sbal_0574 -247 3.9 TATGACTAATTATGCTGA
Shewanella frigidimarina NCIMB 400 Sfri_3296 -301 4.4 TATGTGTAATTATTCACT
-241 3.9 TATGACTATTTATGCTTC
-189 4 TATCAATCTTTATGCAGA
Shewanella amazonensis SB2B Sama_3008 -308 3.8 TATGTCTATTTATCCAAT
-247 4.2 TCTGACTAAATATGCCAT
Shewanella loihica PV-4 Shew_0581 -304 5 TGTGACTATATATTCATA
-244 4 TCTGACTATTTATGCTCA
Shewanella pealeana ATCC 700345 Spea_3513 -281 3.7 CGTGAATAACTAGTAATT
-242 4 TGTGACTATTTATGCTTA
Shewanella halifaxensis HAW-EB4 Shal_3607 -242 4 TATGACTATTTATGCTTA
Shewanella piezotolerans WP3 swp_0750 -244 4 TATGACTAAATATGCTTA
Shewanella sediminis HAW-EB3 Ssed_0812 -246 3.9 TATGACTAATTATGCTTA
Shewanella woodyi ATCC 51908 Swoo_0658 -245 4.2 TATGACTAAATATGCTCT
Position: -304
Score: 5.6
Sequence: ATTGAATATTTATTCACT
Position: -119
Score: 5
Sequence: TGTGAATATGTATTCAAA
Locus tag: ATW7_06903
ATW7_06903 -304 5.6 ATTGAATATTTATTCACT
-119 5 TGTGAATATGTATTCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltB
Ortholog function: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Shewanella oneidensis MR-1 SO_1325 -359 4.5 AAAGAATAACAATTCACT
-313 4.3 TTTGCAATAAAAATCACT
Shewanella putrefaciens CN-32 Sputcn32_1136 -358 4.7 GAAGAATAAAAATTCACT
-312 4.3 TTTGCAATAAAAATCACT
Shewanella sp W3-18-1 Sputw3181_3028 -358 4.8 GGAGAATAAAAATTCACT
-312 4.3 TTTGCAATAAAAATCACT
Shewanella sp ANA-3 Shewana3_3050 -360 4.5 ATAGAATAACAATTCATT
-339 4 TATAAATTTTTATACATC
-314 4.3 TTTGCAATAAAAATCACT
Shewanella sp MR-4 Shewmr4_2872 -359 4.5 AAAGAATAACAATTCACT
-313 4.3 TTTGCAATAAAAATCACT
Shewanella sp MR-7 Shewmr7_2954 -359 4.5 AAAGAATAACAATTCACT
-313 4.3 TTTGCAATAAAAATCACT
Shewanella baltica OS155 Sbal_1178 -361 5.3 AATGAATAATAATTCAAC
-315 4.3 TTTGCAATAAAAATCACT
Shewanella denitrificans OS217 Sden_2790 -359 5.1 AGTGAATATTTAGTCAGT
Shewanella frigidimarina NCIMB 400 Sfri_2951 -358 5 AATGAATATTTAATCATT
-312 4.3 TTTAAAATAAAATTCACT
Shewanella amazonensis SB2B Sama_0857 -362 4.6 TTTGAATAGTTAATCAAT
-316 4 CCTGCAAAAAAAATCACT
Shewanella loihica PV-4 Shew_1032 -324 3.8 TTTGTTAAATAATTCACT
-303 4.3 TATGCAATAAAAATCACT
Shewanella pealeana ATCC 700345 Spea_1013 -354 4.9 AATGCATAAATAGTCACA
-330 4.3 AGTGATTATCATTTCACT
-309 4.3 TCTGCAAAAAAAATCACT
Shewanella halifaxensis HAW-EB4 Shal_1061 -355 4.6 TATGCATAAATAAGCAAA
-331 3.8 AGTGACTACCATTTCACT
-310 4 TCTGCAAGAAAAATCACT
Shewanella piezotolerans WP3 swp_3803 -355 4.4 TCTGCATAATTAGTCAAG
-331 4.3 AGTGACTATCATTTCACT
-310 4.3 TTTGCAATAAAAATCACT
Shewanella sediminis HAW-EB3 Ssed_1126 -301 4.1 CGTGCAAAAAAAATCACT
-127 4.3 ACTCAAATTTTATGCAAT
-62 3.8 GGTGAATATCTATACTAA
Shewanella woodyi ATCC 51908 Swoo_1221 -349 4.7 ACTGCATAAATAAGCAAA
-314 3.9 ATTCATTATATTTGCAAT
Position: 26
Score: 4.3
Sequence: TGCCAATATAAATTCAGT
Locus tag: ATW7_00270
ATW7_00270 26 4.3 TGCCAATATAAATTCAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hisH
Ortholog function: Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)
Shewanella frigidimarina NCIMB 400 Sfri_1716 -268 4.2 AGTGCATAAATCCTCATT
-114 4.1 GGTGAACACTTATTCACA
Shewanella amazonensis SB2B Sama_1945 -352 5 TATGAATATTCATGCAAA
Shewanella piezotolerans WP3 swp_3006 -292 4.4 GATTAATTTAAATGCATC
Shewanella woodyi ATCC 51908 Swoo_2088 -317 4.7 ATTGATTAGATATTCATA
Position: -189
Score: 4.2
Sequence: AAGGAAATAAAATGCACT
Locus tag: ATW7_00290
ATW7_00290 -189 4.2 AAGGAAATAAAATGCACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hisG
Ortholog function: ATP phosphoribosyltransferase (EC 2.4.2.17)
Shewanella frigidimarina NCIMB 400 Sfri_1720 -268 4.2 AGTGCATAAATCCTCATT
-114 4.1 GGTGAACACTTATTCACA
Shewanella amazonensis SB2B Sama_1941 -352 5 TATGAATATTCATGCAAA
Shewanella piezotolerans WP3 swp_3001 -292 4.4 GATTAATTTAAATGCATC
Shewanella woodyi ATCC 51908 Swoo_2092 -317 4.7 ATTGATTAGATATTCATA
Position: 3
Score: 3.9
Sequence: GCTAAATTAAAATTAACA
Locus tag: ATW7_11631
ATW7_11631 3 3.9 GCTAAATTAAAATTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: oadA
Ortholog function: Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3)
Shewanella putrefaciens CN-32 Sputcn32_1030 -265 4.3 TATCCTTATAAATTCACT
-154 4.3 TGTGAATATTTAGTCTTT
-133 4 TGTGATTTTATATGCTGC
Shewanella sp W3-18-1 Sputw3181_3135 -265 4.3 TATCCTTATAAATTCACT
-154 4.3 TGTGAATATTTAGTCTTT
-133 4 TGTGATTTTATATGCTGC
Shewanella sp MR-7 Shewmr7_3068 -322 3.9 ATTCAATTTAAAGGCCAT
-176 3.7 AACGAATGTTCATTTAAT
Shewanella baltica OS155 Sbal_1025 -139 4.9 TGTGATTTTTTATTCAAA
Shewanella frigidimarina NCIMB 400 Sfri_1066 -182 3.8 GTTGAATAATCGTTGAGT
-165 4.6 TTTGAATATTTATGCTTT
Shewanella amazonensis SB2B Sama_1052 -352 4.1 ACTGCATATACTTCCACT
-307 3.6 TCTGCCCATGAATGCAGT
Shewanella loihica PV-4 Shew_1220 -377 4.3 ATTGCATAATCTTGCATA
-331 4 ATTCAATTTTCAAGCAGA
Shewanella pealeana ATCC 700345 Spea_1199 -73 4.2 TGTGAATGAATAGTGAAT
-62 4.1 AGTGAATATTTATTTTTA
Shewanella halifaxensis HAW-EB4 Shal_1236 -63 4.8 GGTGAATATTTATTGAGT
-43 4.1 CATCCATGTTTATTCACA
Shewanella piezotolerans WP3 swp_1379 -157 3.6 TATCAACAGAAATGCATA
-136 4.4 TGTGAATAAATAGTGATT
Shewanella sediminis HAW-EB3 Ssed_1321 -322 4.4 ACTGCATAACTTTTCATT
Shewanella woodyi ATCC 51908 Swoo_3336 -110 4.4 AATGAATAAAAAGTTATT
Position: -63
Score: 5.1
Sequence: GCTGCATAATTATTCATT
Locus tag: ATW7_12338
ATW7_12338 -63 5.1 GCTGCATAATTATTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argR
Ortholog function: Arginine metabolism transcriptional regulator ArgR
Shewanella oneidensis MR-1 SO_0769 -93 5.5 ATTGCATTTTTATTCAGT
Shewanella putrefaciens CN-32 Sputcn32_3220 -96 5.5 AGTGAATTTTTATTCAAC
Shewanella sp W3-18-1 Sputw3181_0721 -96 5.5 AGTGAATTTTTATTCAAC
Shewanella sp ANA-3 Shewana3_3510 -93 5.5 ATTGCATTTTTATTCAGT
Shewanella sp MR-4 Shewmr4_3340 -93 5.5 ATTGCATTTTTATTCAGT
Shewanella sp MR-7 Shewmr7_0613 -93 5.2 ACTGCATTTTTATTCATC
Shewanella baltica OS155 Sbal_0608 -96 5.5 AGTGAATTTTTATTCAAC
Shewanella denitrificans OS217 Sden_0825 -89 5.7 AGTGAATTTTTATTCACT
Shewanella frigidimarina NCIMB 400 Sfri_0640 -104 5.6 AATGAATTTTTATTCAAT
Shewanella amazonensis SB2B Sama_0671 -98 5.3 TCTGCATTTTTATTCACA
Shewanella loihica PV-4 Shew_0866 -95 5.1 CCTGAATTTTTATTCACA
Shewanella pealeana ATCC 700345 Spea_0849 -95 5.5 AATGAATTTTTATTCAGA
Shewanella halifaxensis HAW-EB4 Shal_0902 -95 5.5 AATGAATTTTTATTCACA
Shewanella piezotolerans WP3 swp_4101 -95 5.3 CATGAATTTTTATTCAAT
Shewanella sediminis HAW-EB3 Ssed_0951 -95 5.2 GTTGCATTTTTATTCATA
Shewanella woodyi ATCC 51908 Swoo_1001 -95 5 ATTGCATTCTTATTCATT
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