Regulons of Alteromonas macleodii 'Deep ecotype'



Type	Regulator	Effector	Pathway	Genes	Sites
TF	ArgR	Arginine	Arginine degradation; Arginine biosynthesis	9	13
TF	BirA	Biotin	Biotin biosynthesis	1	1
TF	Crp	Cyclic 3',5'-AMP	Carbon catabolism	42	68
TF	FabR	Unsaturated acyl-ACP; Unsaturated acyl-CoA	Fatty acid biosynthesis	4	4
TF	FadR	Palmitoyl-CoA; Oleoyl-CoA	Fatty acid degradation	1	1
TF	Fnr	Oxygen	Anaerobic metabolism	4	6
TF	Fur	Iron ion, (Fe2+)	Iron homeostasis	5	5
TF	GcvA	Glycine	Glycine metabolism	2	2
TF	GlmR	Glucosamine-6-phosphate	Lipopolysaccharide biosynthesis	1	1
TF	HexR	2-keto-3-deoxy-6-phosphogluconate	Central carbohydrate metabolism	4	8
TF	HutC	cis-Urocanic acid	Histidine utilization	2	2
TF	IlvY	Acetohydroxybutyrate; 2-Acetolactate	Branched-chain amino acid biosynthesis	2	2
TF	IscR	Iron-sulfur cluster redox state	Iron-sulfur cluster biogenesis	2	4
TF	LexA	DNA damage	SOS response	5	6
TF	LiuR		Branched-chain amino acid degradation	3	5
TF	MalR	Maltose	Maltodextrin utilization	3	3
TF	NarP	Nitrite; Nitrate	Nitrate and nitrite respiration	2	2
TF	NtrC	Phosphorylated NtrB, signal histidine kinase	Nitrogen assimilation	3	5
TF	PdhR	Pyruvate	Pyruvate metabolism	1	1
TF	PrpR	2-methylcitrate	Methylcitrate utilization	1	2
TF	PsrA	Oleate	Fatty acid degradation	1	1
TF	PUR		Purine metabolism	2	2
TF	SoxR	Paraquat	Superoxide stress response	1	1
TF	TyrR	Tyrosine; Phenylalanine	Amino acid utilization	9	13

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --