Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing pydC gene

Properties
Regulog: RutR - Rhodobacterales
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Pyrimidine utilization
Effector: Uracil
Phylum: Proteobacteria/alpha
Built upon 62 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Jannaschia sp. CCS1
Position: -57
Score: 5.67797
Sequence: CCTTGACCGTTTGGTCAAAA
Locus tag: Jann_2709
Name: praX
Funciton: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)
Locus tag: Jann_2708
Name: Jann_2708
Funciton: Hypothetical protein
Locus tag: Jann_2707
Name: pydC
Funciton: Beta-ureidopropionase (EC 3.5.1.6)
Locus tag: Jann_2706
Name: Jann_2706
Funciton: hypothetical protein
Locus tag: Jann_2705
Name: pydB
Funciton: phenylhydantoinase
Locus tag: Jann_2704
Name: Jann_2704
Funciton: Hypothetical protein
Locus tag: Jann_2703
Name: pytA
Funciton: Pyrimidine ABC transporter, ATP-binding protein
Locus tag: Jann_2702
Name: Jann_2702
Funciton: Predicted N-acetyltransferase
Locus tag: Jann_2701
Name: pytB
Funciton: Pyrimidine ABC transporter, permease protein 1
Locus tag: Jann_2700
Name: pytC
Funciton: Pyrimidine ABC transporter, permease protein 2
Locus tag: Jann_2699
Name: pytD
Funciton: Pyrimidine ABC transporter, substrate-binding protein
praX-Jann_2708-pydC-Jann_2706-pydB-Jann_2704-pytA-Jann_2702-pytB-pytC-pytD -57 5.7 CCTTGACCGTTTGGTCAAAA Jann_2709
Loktanella vestfoldensis SKA53
Position: -39
Score: 5.92449
Sequence: TTTTGACCATCTGGTCAAAC
Locus tag: SKA53_10674
Name: pydC
Funciton: Beta-ureidopropionase (EC 3.5.1.6)
Locus tag: SKA53_10669
Name: SKA53_10669
Funciton: Hypothetical protein
Locus tag: SKA53_10664
Name: pydB
Funciton: phenylhydantoinase
Locus tag: SKA53_10659
Name: pytA
Funciton: Pyrimidine ABC transporter, ATP-binding protein
Locus tag: SKA53_10654
Name: pytB
Funciton: Pyrimidine ABC transporter, permease protein 1
Locus tag: SKA53_10649
Name: pytC
Funciton: Pyrimidine ABC transporter, permease protein 2
Locus tag: SKA53_10644
Name: pytD
Funciton: Pyrimidine ABC transporter, substrate-binding protein
pydC-SKA53_10669-pydB-pytA-pytB-pytC-pytD -39 5.9 TTTTGACCATCTGGTCAAAC SKA53_10674
Oceanicola batsensis HTCC2597
Position: -43
Score: 6.02562
Sequence: CTTTGACCGATTGGTCAAAA
Locus tag: OB2597_04325
Name: pydC
Funciton: Beta-ureidopropionase (EC 3.5.1.6)
pydC -43 6 CTTTGACCGATTGGTCAAAA OB2597_04325
Oceanicola granulosus HTCC2516
Position: -69
Score: 5.61779
Sequence: CTTTAACCGATTGGTCAAAT
Locus tag: OG2516_10901
Name: pydC
Funciton: Beta-ureidopropionase (EC 3.5.1.6)
Locus tag: OG2516_10896
Name: OG2516_10896
Funciton: Hypothetical protein
Locus tag: OG2516_10891
Name: null
Funciton: N-carbamoyl-L-amino acid amidohydrolase
Locus tag: OG2516_10886
Name: pydB
Funciton: phenylhydantoinase
Locus tag: OG2516_10881
Name: RSP_1242
Funciton: Predicted lyase
Locus tag: OG2516_10876
Name: pytA
Funciton: Pyrimidine ABC transporter, ATP-binding protein
Locus tag: OG2516_10871
Name: pytB
Funciton: Pyrimidine ABC transporter, permease protein 1
Locus tag: OG2516_10866
Name: pytC
Funciton: Pyrimidine ABC transporter, permease protein 2
Locus tag: OG2516_10861
Name: pytD
Funciton: Pyrimidine ABC transporter, substrate-binding protein
pydC-OG2516_10896-OG2516_10891-pydB-RSP_1242-pytA-pytB-pytC-pytD -69 5.6 CTTTAACCGATTGGTCAAAT OG2516_10901
Paracoccus denitrificans PD1222
Position: -225
Score: 5.14572
Sequence: TATTGACTGGTTGATAAAAT
Locus tag: Pden_1113
Name: pydC
Funciton: Beta-ureidopropionase (EC 3.5.1.6)
Locus tag: Pden_1112
Name: pydB
Funciton: phenylhydantoinase
Locus tag: Pden_1111
Name: pydP
Funciton: Pyrimidine permease in reductive pathway
pydC-pydB-pydP -225 5.1 TATTGACTGGTTGATAAAAT Pden_1113
Rhodobacter sphaeroides 2.4.1
Position: -121
Score: 4.79841
Sequence: TATTGACCGCTTGGTCAGGT
Position: -87
Score: 4.82363
Sequence: ATCTGACCGGATGGTCGAAC
Locus tag: RSP_0184
Name: pydC
Funciton: Beta-ureidopropionase (EC 3.5.1.6)
Locus tag: RSP_0183
Name: pydB
Funciton: phenylhydantoinase
pydC-pydB -121 4.8 TATTGACCGCTTGGTCAGGT RSP_0184
-87 4.8 ATCTGACCGGATGGTCGAAC
Rhodobacterales bacterium HTCC2654
Position: -233
Score: 5.7531
Sequence: ATTTAACCGAATGGTAAAAA
Locus tag: RB2654_14955
Name: pydC
Funciton: Beta-ureidopropionase (EC 3.5.1.6)
pydC -233 5.8 ATTTAACCGAATGGTAAAAA RB2654_14955
Roseobacter sp. MED193
Position: -119
Score: 6.08052
Sequence: GTTTGACCAGTTGGTCAAAT
Locus tag: MED193_05519
Name: pydC
Funciton: Beta-ureidopropionase (EC 3.5.1.6)
Locus tag: MED193_05514
Name: pydB
Funciton: phenylhydantoinase
Locus tag: MED193_05509
Name: pytA
Funciton: Pyrimidine ABC transporter, ATP-binding protein
Locus tag: MED193_05504
Name: MED193_05504
Funciton: Hypothetical protein
Locus tag: MED193_05499
Name: pytB
Funciton: Pyrimidine ABC transporter, permease protein 1
Locus tag: MED193_05494
Name: MED193_05494
Funciton: Hypothetical protein
Locus tag: MED193_05489
Name: pytC
Funciton: Pyrimidine ABC transporter, permease protein 2
pydC-pydB-pytA-MED193_05504-pytB-MED193_05494-pytC -119 6.1 GTTTGACCAGTTGGTCAAAT MED193_05519
Roseovarius nubinhibens ISM
Position: -41
Score: 5.88633
Sequence: ACTTTACCAAATGGTAAAAT
Locus tag: ISM_13620
Name: pydC
Funciton: Beta-ureidopropionase (EC 3.5.1.6)
Locus tag: ISM_13615
Name: pydB
Funciton: phenylhydantoinase
Locus tag: ISM_13610
Name: RSP_1242
Funciton: Predicted lyase
Locus tag: ISM_13605
Name: pytA
Funciton: Pyrimidine ABC transporter, ATP-binding protein
Locus tag: ISM_13600
Name: pytB
Funciton: Pyrimidine ABC transporter, permease protein 1
Locus tag: ISM_13595
Name: pytC
Funciton: Pyrimidine ABC transporter, permease protein 2
Locus tag: ISM_13590
Name: pytD
Funciton: Pyrimidine ABC transporter, substrate-binding protein
pydC-pydB-RSP_1242-pytA-pytB-pytC-pytD -41 5.9 ACTTTACCAAATGGTAAAAT ISM_13620
Roseovarius sp. 217
Position: -33
Score: 5.74021
Sequence: AGTTTACCAAATGGTAAAAA
Locus tag: ROS217_12311
Name: pydC
Funciton: Beta-ureidopropionase (EC 3.5.1.6)
Locus tag: ROS217_12306
Name: pydB
Funciton: phenylhydantoinase
Locus tag: ROS217_12301
Name: pytA
Funciton: Pyrimidine ABC transporter, ATP-binding protein
Locus tag: ROS217_12296
Name: pytB
Funciton: Pyrimidine ABC transporter, permease protein 1
Locus tag: ROS217_12291
Name: pytC
Funciton: Pyrimidine ABC transporter, permease protein 2
Locus tag: ROS217_12286
Name: pytD
Funciton: Pyrimidine ABC transporter, substrate-binding protein
pydC-pydB-pytA-pytB-pytC-pytD -33 5.7 AGTTTACCAAATGGTAAAAA ROS217_12311
Silicibacter TM1040
Position: -153
Score: 6.08052
Sequence: GTTTGACCAGTTGGTCAAAT
Locus tag: TM1040_1498
Name: pydC
Funciton: Beta-ureidopropionase (EC 3.5.1.6)
Locus tag: TM1040_1497
Name: pydB
Funciton: phenylhydantoinase
Locus tag: TM1040_1496
Name: pytA
Funciton: Pyrimidine ABC transporter, ATP-binding protein
Locus tag: TM1040_1495
Name: pytB
Funciton: Pyrimidine ABC transporter, permease protein 1
Locus tag: TM1040_1494
Name: pytC
Funciton: Pyrimidine ABC transporter, permease protein 2
pydC-pydB-pytA-pytB-pytC -153 6.1 GTTTGACCAGTTGGTCAAAT TM1040_1498
Silicibacter pomeroyi DSS-3
Position: -64
Score: 6.08052
Sequence: GTTTGACCAGTTGGTCAAAT
Locus tag: SPO1781
Name: pydC
Funciton: Beta-ureidopropionase (EC 3.5.1.6)
Locus tag: SPO1782
Name: RB2654_14945
Funciton: Hypothetical protein
Locus tag: SPO1783
Name: pydB
Funciton: phenylhydantoinase
pydC-RB2654_14945-pydB -64 6.1 GTTTGACCAGTTGGTCAAAT SPO1781
Sulfitobacter sp. EE-36
Position: -61
Score: 5.75672
Sequence: GATTTACCAAATGGTAAAAA
Locus tag: EE36_09058
Name: pydC
Funciton: Beta-ureidopropionase (EC 3.5.1.6)
pydC -61 5.8 GATTTACCAAATGGTAAAAA EE36_09058
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