Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing pyrD gene

Properties
Regulator type: RNA regulatory element
Name: PyrR
RFAM: RF00515
Regulation mode:
Biological process: Pyrimidine metabolism
Effector: PyrR
Phylum: Firmicutes
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Anoxybacillus flavithermus WK1
Position: -143
Score: 66.97
Sequence: ACACACCTTTTAAAA...
Locus tag: Aflv_1806
Name: pyrB
Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: Aflv_1805
Name: pyrC
Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: Aflv_1804
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: Aflv_1803
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: Aflv_1802
Name: pyrK
Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: Aflv_1801
Name: pyrD
Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: Aflv_1800
Name: pyrF
Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: Aflv_1799
Name: pyrE
Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10)
pyrB-pyrC-carA-carB-pyrK-pyrD-pyrF-pyrE -143 67 ACACACCTTTTAAAA... Aflv_1806
Bacillus amyloliquefaciens FZB42
Position: -141
Score: 72.25
Sequence: AAACCTTTTAAAGAA...
Locus tag: RBAM_015320
Name: pyrB
Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: RBAM_015330
Name: pyrC
Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: RBAM_015340
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: RBAM_015350
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: RBAM_015360
Name: pyrK
Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: RBAM_015370
Name: pyrD
Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: RBAM_015380
Name: pyrF
Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: RBAM_015390
Name: pyrE
Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10)
pyrB-pyrC-carA-carB-pyrK-pyrD-pyrF-pyrE -141 72.2 AAACCTTTTAAAGAA... RBAM_015320
Bacillus cereus ATCC 14579
Position: -156
Score: 49.82
Sequence: AATAACCTTTTAATT...
Locus tag: BC3889
Name: pyrB
Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: BC3888
Name: pyrC
Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: BC3887
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: BC3886
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: BC3885
Name: pyrK
Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: BC3884
Name: pyrD
Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: BC3883
Name: pyrF
Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: BC3882
Name: pyrE
Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10)
pyrB-pyrC-carA-carB-pyrK-pyrD-pyrF-pyrE -156 49.8 AATAACCTTTTAATT... BC3889
Bacillus clausii KSM-K16
Position: -139
Score: 66.32
Sequence: AACCCTCTTTAAACG...
Locus tag: ABC2337
Name: pyrP
Funciton: Uracil permease
Locus tag: ABC2336
Name: pyrB
Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: ABC2335
Name: pyrC
Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: ABC2334
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: ABC2333
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: ABC2332
Name: pyrK
Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: ABC2331
Name: pyrD
Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: ABC2330
Name: pyrF
Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: ABC2329
Name: pyrE
Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10)
pyrP-pyrB-pyrC-carA-carB-pyrK-pyrD-pyrF-pyrE -139 66.3 AACCCTCTTTAAACG... ABC2337
Bacillus halodurans C-125
Position: -223
Score: 35.81
Sequence: ATCGACCTTTAATGA...
Locus tag: BH2539
Name: pyrB
Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: BH2538
Name: pyrC
Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: BH2537
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: BH2536
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: BH2535
Name: pyrK
Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: BH2534
Name: pyrD
Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: BH2533
Name: pyrF
Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: BH2532
Name: pyrE
Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10)
pyrB-pyrC-carA-carB-pyrK-pyrD-pyrF-pyrE -223 35.8 ATCGACCTTTAATGA... BH2539
Bacillus licheniformis DSM 13
Position: -143
Score: 71.72
Sequence: AAACCTTTTAAATGA...
Locus tag: BLi01769
Name: pyrB
Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: BLi01770
Name: pyrC
Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: BLi01771
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: BLi01772
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: BLi01773
Name: pyrK
Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: BLi01774
Name: pyrD
Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: BLi01775
Name: pyrF
Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: BLi01776
Name: pyrE
Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10)
pyrB-pyrC-carA-carB-pyrK-pyrD-pyrF-pyrE -143 71.7 AAACCTTTTAAATGA... BLi01769
Bacillus pumilus SAFR-032
Position: -154
Score: 63.86
Sequence: AAACCTTTTAAAAGA...
Locus tag: BPUM_1448
Name: pyrB
Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: BPUM_1449
Name: pyrC
Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: BPUM_1450
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: BPUM_1451
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: BPUM_1452
Name: pyrK
Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: BPUM_1453
Name: pyrD
Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: BPUM_1454
Name: pyrF
Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: BPUM_1455
Name: pyrE
Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10)
pyrB-pyrC-carA-carB-pyrK-pyrD-pyrF-pyrE -154 63.9 AAACCTTTTAAAAGA... BPUM_1448
Bacillus subtilis subsp. subtilis str. 168
Position: -146
Score: 80.67
Sequence: AAACCTTTTAATGAA...
Locus tag: BSU15490
Name: pyrB
Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: BSU15500
Name: pyrC
Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: BSU15510
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: BSU15520
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: BSU15530
Name: pyrK
Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: BSU15540
Name: pyrD
Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: BSU15550
Name: pyrF
Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: BSU15560
Name: pyrE
Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10)
pyrB-pyrC-carA-carB-pyrK-pyrD-pyrF-pyrE -146 80.7 AAACCTTTTAATGAA... BSU15490
Geobacillus kaustophilus HTA426
Position: -160
Score: 64.48
Sequence: GCACCTTTTAATTAA...
Locus tag: GK1149
Name: pyrB
Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: GK1150
Name: pyrC
Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: GK1151
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: GK1152
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: GK1153
Name: pyrK
Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: GK1154
Name: pyrD
Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: GK1155
Name: pyrF
Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: GK1156
Name: null
Funciton: Hypothetical protein
Locus tag: GK1157
Name: pyrE
Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10)
pyrB-pyrC-carA-carB-pyrK-pyrD-pyrF-GK1156-pyrE -160 64.5 GCACCTTTTAATTAA... GK1149
Oceanobacillus iheyensis HTE831
Position: -165
Score: 53.4
Sequence: CAGCTTTTAATCAAA...
Locus tag: OB1488
Name: pyrB
Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: OB1489
Name: pyrC
Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: OB1490
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: OB1491
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: OB1492
Name: pyrK
Funciton: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
Locus tag: OB1493
Name: pyrD
Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Locus tag: OB1494
Name: pyrF
Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: OB1495
Name: pyrE
Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10)
pyrB-pyrC-carA-carB-pyrK-pyrD-pyrF-pyrE -165 53.4 CAGCTTTTAATCAAA... OB1488
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