Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing prpB gene

Properties
Regulog: PrpR - Alteromonadales
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Methylcitrate utilization
Effector: 2-methylcitrate
Phylum: Proteobacteria/gamma
Built upon 29 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Alteromonadales bacterium TW-7
Position: -175
Score: 4.21828
Sequence: GCTGTCGACACT
Position: -113
Score: 5.27921
Sequence: AGTGTCGACAAT
Position: -26
Score: 5.82454
Sequence: ATTGTCGACAAT
Locus tag: ATW7_14131
Name: prpR
Funciton: Propionate catabolism transcriptional regulator, GntR family
Locus tag: ATW7_14126
Name: prpB
Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: ATW7_14121
Name: prpC
Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: ATW7_14116
Name: acnD
Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: ATW7_14111
Name: prpF
Funciton: Aconitase accessory protein PrpF
prpR-prpB-prpC-acnD-prpF -175 4.2 GCTGTCGACACT ATW7_14131
-113 5.3 AGTGTCGACAAT
-26 5.8 ATTGTCGACAAT
Alteromonas macleodii 'Deep ecotype'
Position: -87
Score: 5.36427
Sequence: GTTGTCGACAAT
Position: -34
Score: 5.29278
Sequence: ATTGTCGACATT
Locus tag: MADE_03369
Name: prpR
Funciton: Propionate catabolism transcriptional regulator, GntR family
Locus tag: MADE_03370
Name: prpB
Funciton: Methylisocitrate lyase (EC 4.1.3.30)
prpR-prpB -87 5.4 GTTGTCGACAAT MADE_03369
-34 5.3 ATTGTCGACATT
Colwellia psychrerythraea 34H
Position: -141
Score: 5.82454
Sequence: ATTGTCGACAAT
Position: -69
Score: 5.12525
Sequence: TTTGTCGACAAT
Locus tag: CPS_2823
Name: prpR
Funciton: Propionate catabolism transcriptional regulator, GntR family
Locus tag: CPS_2822
Name: prpB
Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: CPS_2821
Name: prpC
Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
prpR-prpB-prpC -141 5.8 ATTGTCGACAAT CPS_2823
-69 5.1 TTTGTCGACAAT
Glaciecola sp. HTCC2999
Position: -91
Score: 5.36427
Sequence: GTTGTCGACAAT
Position: -39
Score: 5.82454
Sequence: ATTGTCGACAAT
Locus tag: GHTCC_010100001200
Name: prpR
Funciton: Propionate catabolism transcriptional regulator, GntR family
Locus tag: GHTCC_010100001195
Name: prpB
Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: GHTCC_010100001190
Name: prpC
Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: GHTCC_010100001185
Name: acnD
Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: GHTCC_010100001180
Name: prpF
Funciton: Aconitase accessory protein PrpF
prpR-prpB-prpC-acnD-prpF -91 5.4 GTTGTCGACAAT GHTCC_010100001200
-39 5.8 ATTGTCGACAAT
Idiomarina baltica OS145
Position: -90
Score: 5.82454
Sequence: ATTGTCGACAAT
Position: -17
Score: 4.57992
Sequence: TATGTCGACAAT
Locus tag: OS145_00715
Name: prpR
Funciton: Propionate catabolism transcriptional regulator, GntR family
Locus tag: OS145_00710
Name: prpB
Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: OS145_00705
Name: prpC
Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: OS145_00700
Name: acnD
Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: OS145_00695
Name: prpF
Funciton: Aconitase accessory protein PrpF
prpR-prpB-prpC-acnD-prpF -90 5.8 ATTGTCGACAAT OS145_00715
-17 4.6 TATGTCGACAAT
Idiomarina loihiensis L2TR
Position: -86
Score: 5.82454
Sequence: ATTGTCGACAAT
Position: -14
Score: 5.12525
Sequence: ACTGTCGACAAT
Locus tag: IL1428
Name: prpR
Funciton: Propionate catabolism transcriptional regulator, GntR family
Locus tag: IL1427
Name: prpB
Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: IL1426
Name: prpC
Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: IL1425
Name: acnD
Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: IL1424
Name: prpF
Funciton: Aconitase accessory protein PrpF
prpR-prpB-prpC-acnD-prpF -86 5.8 ATTGTCGACAAT IL1428
-14 5.1 ACTGTCGACAAT
Pseudoalteromonas atlantica T6c
Position: -168
Score: 5.82454
Sequence: ATTGTCGACAAT
Position: -116
Score: 5.43002
Sequence: ATTGTCGACAAC
Locus tag: Patl_1418
Name: prpR
Funciton: Propionate catabolism transcriptional regulator, GntR family
Locus tag: Patl_1419
Name: prpB
Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: Patl_1420
Name: prpC
Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: Patl_1421
Name: acnD
Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: Patl_1422
Name: prpF
Funciton: Aconitase accessory protein PrpF
prpR-prpB-prpC-acnD-prpF -168 5.8 ATTGTCGACAAT Patl_1418
-116 5.4 ATTGTCGACAAC
Pseudoalteromonas haloplanktis TAC125
Position: -175
Score: 4.37224
Sequence: GGTGTCGACACT
Position: -112
Score: 4.81894
Sequence: GATGTCGACAAT
Position: -25
Score: 5.82454
Sequence: ATTGTCGACAAT
Locus tag: PSHAa1776
Name: prpR
Funciton: Propionate catabolism transcriptional regulator, GntR family
Locus tag: PSHAa1775
Name: prpB
Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: PSHAa1774
Name: prpC
Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: PSHAa1773
Name: acnD
Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: PSHAa1772
Name: prpF
Funciton: Aconitase accessory protein PrpF
prpR-prpB-prpC-acnD-prpF -175 4.4 GGTGTCGACACT PSHAa1776
-112 4.8 GATGTCGACAAT
-25 5.8 ATTGTCGACAAT
Pseudoalteromonas tunicata D2
Position: -150
Score: 4.14655
Sequence: ATTGTCAACATA
Position: -88
Score: 5.82454
Sequence: ATTGTCGACAAT
Position: -21
Score: 5.13192
Sequence: ATTGTCGACAAA
Locus tag: PTD2_20517
Name: prpR
Funciton: Propionate catabolism transcriptional regulator, GntR family
Locus tag: PTD2_20512
Name: prpB
Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: PTD2_20507
Name: prpC
Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: PTD2_20502
Name: acnD
Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: PTD2_20497
Name: prpF
Funciton: Aconitase accessory protein PrpF
prpR-prpB-prpC-acnD-prpF -150 4.1 ATTGTCAACATA PTD2_20517
-88 5.8 ATTGTCGACAAT
-21 5.1 ATTGTCGACAAA
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