Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing rafC gene

Properties
Regulog: RafR - Bifidobacteriaceae
Regulator type: Transcription factor
Regulator family: ROK
Regulation mode: activator
Biological process: Raffinose utilization
Effector:
Phylum: Actinobacteria
Built upon 17 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Bifidobacterium adolescentis ATCC 15703
Position: -161
Score: 5.52088
Sequence: TACTTTCCAAGAATAACAAAATA
Locus tag: BAD_1574
Name: rafB
Funciton: Raffinose ABC transporter, substrate-binding protein
Locus tag: BAD_1573
Name: rafC
Funciton: Raffinose ABC transporter, permease protein 1
Locus tag: BAD_1572
Name: rafD
Funciton: Raffinose ABC transporter, permease protein 2
rafB-rafC-rafD -161 5.5 TACTTTCCAAGAATAACAAAATA BAD_1574
Bifidobacterium angulatum DSM 20098
Position: -230
Score: 4.20765
Sequence: TTCTTTCCTTCGATATGAAATTT
Locus tag: BIFANG_00401
Name: rafB
Funciton: Raffinose ABC transporter, substrate-binding protein
Locus tag: BIFANG_00400
Name: rafC
Funciton: Raffinose ABC transporter, permease protein 1
Locus tag: BIFANG_00399
Name: rafD
Funciton: Raffinose ABC transporter, permease protein 2
rafB-rafC-rafD -230 4.2 TTCTTTCCTTCGATATGAAATTT BIFANG_00401
Bifidobacterium animalis subsp. lactis AD011
Position: -158
Score: 4.14775
Sequence: TAGTTTCCATGAGTATATAAATA
Locus tag: BLA_1522
Name: rafB
Funciton: Raffinose ABC transporter, substrate-binding protein
Locus tag: BLA_1521
Name: rafC
Funciton: Raffinose ABC transporter, permease protein 1
Locus tag: BLA_1520
Name: rafD
Funciton: Raffinose ABC transporter, permease protein 2
rafB-rafC-rafD -158 4.1 TAGTTTCCATGAGTATATAAATA BLA_1522
Bifidobacterium breve DSM 20213
Position: -152
Score: 5.54311
Sequence: TTTATTGCGTTAATCACAAAATA
Locus tag: BIFBRE_00616
Name: rafB
Funciton: Raffinose ABC transporter, substrate-binding protein
Locus tag: BIFBRE_00615
Name: rafC
Funciton: Raffinose ABC transporter, permease protein 1
Locus tag: BIFBRE_00614
Name: rafD
Funciton: Raffinose ABC transporter, permease protein 2
rafB-rafC-rafD -152 5.5 TTTATTGCGTTAATCACAAAATA BIFBRE_00616
Bifidobacterium dentium Bd1
Position: -159
Score: 5.2507
Sequence: TACTTTCTCAGAATAACAAAATC
Locus tag: BDP_2226
Name: rafB
Funciton: Raffinose ABC transporter, substrate-binding protein
Locus tag: BDP_2225
Name: rafC
Funciton: Raffinose ABC transporter, permease protein 1
Locus tag: BDP_2224
Name: rafD
Funciton: Raffinose ABC transporter, permease protein 2
rafB-rafC-rafD -159 5.3 TACTTTCTCAGAATAACAAAATC BDP_2226
Bifidobacterium longum NCC2705
Position: -155
Score: 5.54311
Sequence: TTTATTGCGTTAATCACAAAATA
Locus tag: BL1521
Name: rafB
Funciton: Raffinose ABC transporter, substrate-binding protein
Locus tag: BL1522
Name: rafC
Funciton: Raffinose ABC transporter, permease protein 1
Locus tag: BL1523
Name: rafD
Funciton: Raffinose ABC transporter, permease protein 2
rafB-rafC-rafD -155 5.5 TTTATTGCGTTAATCACAAAATA BL1521
Bifidobacterium longum subsp. infantis ATCC 15697
Position: -152
Score: 5.54311
Sequence: TTTATTGCGTTAATCACAAAATA
Locus tag: Blon_2458
Name: rafB
Funciton: Raffinose ABC transporter, substrate-binding protein
Locus tag: Blon_2457
Name: rafC
Funciton: Raffinose ABC transporter, permease protein 1
Locus tag: Blon_2456
Name: rafD
Funciton: Raffinose ABC transporter, permease protein 2
rafB-rafC-rafD -152 5.5 TTTATTGCGTTAATCACAAAATA Blon_2458