Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing garR gene

Properties
Regulog: GguR - Comamonadaceae
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Glucarate utilization; Galactarate utilization; Galacturonate utilization; Glucuronate utilization
Effector:
Phylum: Proteobacteria/Beta
Built upon 32 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Leptothrix cholodnii SP-6
Position: -65
Score: 5.13193
Sequence: ATGTTGTACGATGACAT
Position: -58
Score: 4.38503
Sequence: ACGATGACATACAACAT
Locus tag: Lcho_1117
Name: kdgD
Funciton: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
Locus tag: Lcho_1118
Name: gudD
Funciton: Glucarate dehydratase (EC 4.2.1.40)
Locus tag: Lcho_1119
Name: kgsD
Funciton: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
Locus tag: Lcho_1120
Name: tctC1
Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
Locus tag: Lcho_1121
Name: serA
Funciton: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Locus tag: Lcho_1122
Name: garL
Funciton: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)
Locus tag: Lcho_1123
Name: garR
Funciton: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
kdgD-gudD-kgsD-tctC1-serA-garL-garR -65 5.1 ATGTTGTACGATGACAT Lcho_1117
-58 4.4 ACGATGACATACAACAT
Methylibium petroleiphilum PM1
Position: -84
Score: 5.08072
Sequence: ATGTTGTACGATGACGT
Position: -77
Score: 4.12899
Sequence: ACGATGACGTACAACTA
Locus tag: Mpe_A0972
Name: tctC1
Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
Locus tag: Mpe_A0973
Name: serA
Funciton: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Locus tag: Mpe_A0974
Name: garL
Funciton: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)
Locus tag: Mpe_A0975
Name: garR
Funciton: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
Locus tag: Mpe_A0976
Name: garK
Funciton: D-glycerate 2-kinase (EC 2.7.1.-)
tctC1-serA-garL-garR-garK -84 5.1 ATGTTGTACGATGACGT Mpe_A0972
-77 4.1 ACGATGACGTACAACTA
Polaromonas naphthalenivorans CJ2
Position: -98
Score: 4.72113
Sequence: GAGTCATCAGACAACGT
Locus tag: Pnap_1591
Name: udh
Funciton: Uronate dehydrogenase (EC 1.1.1.203)
Locus tag: Pnap_1592
Name: uxuL1
Funciton: Predicted glucuronolactone/galactarolactone lactonase
Locus tag: Pnap_1593
Name: uxuP
Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
Locus tag: Pnap_1594
Name: uxuQ
Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
Locus tag: Pnap_1595
Name: uxuM
Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
Locus tag: Pnap_1596
Name: kdgD
Funciton: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
Locus tag: Pnap_1597
Name: garD
Funciton: D-galactarate dehydratase (EC 4.2.1.42)
Locus tag: Pnap_1598
Name: kgsD
Funciton: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
Locus tag: Pnap_1599
Name: garL
Funciton: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)
Locus tag: Pnap_1600
Name: garR
Funciton: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
Locus tag: Pnap_1601
Name: tctC1
Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
udh-uxuL1-uxuP-uxuQ-uxuM-kdgD-garD-kgsD-garL-garR-tctC1 -98 4.7 GAGTCATCAGACAACGT Pnap_1591
Polaromonas sp. JS666
Position: -97
Score: 4.61422
Sequence: CAGTCATCAGACAACCT
Locus tag: Bpro_3109
Name: udh
Funciton: Uronate dehydrogenase (EC 1.1.1.203)
Locus tag: Bpro_3108
Name: uxuL1
Funciton: Predicted glucuronolactone/galactarolactone lactonase
Locus tag: Bpro_3107
Name: uxuP
Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
Locus tag: Bpro_3106
Name: uxuQ
Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
Locus tag: Bpro_3105
Name: uxuM
Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
Locus tag: Bpro_3104
Name: garD
Funciton: D-galactarate dehydratase (EC 4.2.1.42)
Locus tag: Bpro_3103
Name: garL
Funciton: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)
Locus tag: Bpro_3102
Name: garR
Funciton: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
Locus tag: Bpro_3101
Name: tctC1
Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
Locus tag: Bpro_3100
Name: aldE
Funciton: Aldose 1-epimerase (EC 5.1.3.3)
udh-uxuL1-uxuP-uxuQ-uxuM-garD-garL-garR-tctC1-aldE -97 4.6 CAGTCATCAGACAACCT Bpro_3109