Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing rbsB gene

Properties
Regulog: RbsR - Pseudomonadaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Ribose utilization
Effector: Ribose
Phylum: Proteobacteria/gamma
Built upon 5 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Pseudomonas aeruginosa PAO1
Position: -76
Score: 6.5259
Sequence: TAACGCAAACGTTTGCGTCT
Locus tag: PA1946
Name: rbsB
Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: PA1947
Name: rbsA
Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: PA1948
Name: rbsC
Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: PA1949
Name: rbsR
Funciton: Transcriptional repressor of ribose utilization, LacI family
Locus tag: PA1950
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
rbsB-rbsA-rbsC-rbsR-rbsK -76 6.5 TAACGCAAACGTTTGCGTCT PA1946
Pseudomonas entomophila L48
Position: -52
Score: 6.55293
Sequence: CACCGCAAACGTTTGCGATC
Locus tag: PSEEN1952
Name: rbsB
Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: PSEEN1953
Name: rbsA
Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: PSEEN1954
Name: rbsC
Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: PSEEN1955
Name: rbsR
Funciton: Transcriptional repressor of ribose utilization, LacI family
Locus tag: PSEEN1956
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: PSEEN1957
Name: rbsD
Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: PSEEN1958
Name: uriH
Funciton: Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)
rbsB-rbsA-rbsC-rbsR-rbsK-rbsD-uriH -52 6.6 CACCGCAAACGTTTGCGATC PSEEN1952
Pseudomonas fluorescens Pf-5
Position: -140
Score: 6.29544
Sequence: TTACGCAAACGTTTGCGCGG
Locus tag: PFL_2101
Name: rbsB
Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: PFL_2102
Name: rbsA
Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: PFL_2103
Name: rbsC
Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: PFL_2104
Name: rbsR
Funciton: Transcriptional repressor of ribose utilization, LacI family
Locus tag: PFL_2105
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: PFL_2106
Name: rbsD
Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: PFL_2107
Name: uriH
Funciton: Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)
rbsB-rbsA-rbsC-rbsR-rbsK-rbsD-uriH -140 6.3 TTACGCAAACGTTTGCGCGG PFL_2101
Pseudomonas putida KT2440
Position: -53
Score: 6.44527
Sequence: CAACGCAAACGTTTGCTATC
Locus tag: PP2454
Name: rbsB
Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: PP2455
Name: rbsA
Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: PP2456
Name: rbsC
Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: PP2457
Name: rbsR
Funciton: Transcriptional repressor of ribose utilization, LacI family
Locus tag: PP2458
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: PP2459
Name: rbsD
Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: PP2460
Name: uriH
Funciton: Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)
rbsB-rbsA-rbsC-rbsR-rbsK-rbsD-uriH -53 6.4 CAACGCAAACGTTTGCTATC PP2454
Pseudomonas syringae pv. tomato str. DC3000
Position: -84
Score: 6.63194
Sequence: CCTCGCAAACGTTTGCGTGT
Locus tag: PSPTO2367
Name: rbsB
Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: PSPTO2368
Name: rbsA
Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: PSPTO2369
Name: rbsC
Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: PSPTO2370
Name: rbsR
Funciton: Transcriptional repressor of ribose utilization, LacI family
Locus tag: PSPTO2371
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: PSPTO2372
Name: rbsD
Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: PSPTO2373
Name: uriH
Funciton: Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)
rbsB-rbsA-rbsC-rbsR-rbsK-rbsD-uriH -84 6.6 CCTCGCAAACGTTTGCGTGT PSPTO2367