Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing paaA gene

Properties
Regulog: PaaR - Actinobacteria
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Phenylacetic acid degradation
Effector: Phenylacetyl-CoA
Phylum: Actinobacteria
Built upon 85 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Acidothermus cellulolyticus 11B
Position: -41
Score: 5.34778
Sequence: GTCAACCGAACATTCGGTCGGT
Locus tag: Acel_1443
Name: paaA
Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: Acel_1442
Name: paaB
Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: Acel_1441
Name: paaC
Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: Acel_1440
Name: paaD
Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: Acel_1439
Name: paaE
Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
paaA-paaB-paaC-paaD-paaE -41 5.3 GTCAACCGAACATTCGGTCGGT Acel_1443
Arthrobacter chlorophenolicus A6
Position: -64
Score: 5.82946
Sequence: CCTGAACGAACGGTCGGTAAAT
Locus tag: Achl_2964
Name: paaA
Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: Achl_2963
Name: paaB
Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: Achl_2962
Name: paaC
Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: Achl_2961
Name: paaD
Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: Achl_2960
Name: paaE
Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
Locus tag: Achl_2959
Name: paaG
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
paaA-paaB-paaC-paaD-paaE-paaG -64 5.8 CCTGAACGAACGGTCGGTAAAT Achl_2964
Arthrobacter sp. FB24
Position: -49
Score: 5.88382
Sequence: CCTGAACGAACGGTCGGTAATT
Locus tag: Arth_3218
Name: paaA
Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: Arth_3217
Name: paaB
Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: Arth_3216
Name: paaC
Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: Arth_3215
Name: paaD
Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: Arth_3214
Name: paaE
Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
Locus tag: Arth_3213
Name: paaG
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
paaA-paaB-paaC-paaD-paaE-paaG -49 5.9 CCTGAACGAACGGTCGGTAATT Arth_3218
Brevibacterium linens BL2
Position: -105
Score: 4.50547
Sequence: CAATACAGAACAAATGGTCAGT
Locus tag: BlinB01000722
Name: paaA
Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: BlinB01000723
Name: paaB
Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: BlinB01000724
Name: paaC
Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: BlinB01000725
Name: paaD
Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: BlinB01000726
Name: paaE
Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
Locus tag: BlinB01000727
Name: paaJ
Funciton: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
Locus tag: BlinB01000728
Name: paaF
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: BlinB01000729
Name: paaH
Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
Locus tag: BlinB01000730
Name: paaG
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
paaA-paaB-paaC-paaD-paaE-paaJ-paaF-paaH-paaG -105 4.5 CAATACAGAACAAATGGTCAGT BlinB01000722
Corynebacterium efficiens YS-314
Position: -128
Score: 6.07241
Sequence: ACTGACCGGGCGGTCGGTTAGT
Locus tag: CE0667
Name: paaA
Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: CE0668
Name: paaB
Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: CE0669
Name: paaC
Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: CE0670
Name: paaD
Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: CE0671
Name: paaE
Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
Locus tag: CE0672
Name: paaG
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: CE0673
Name: paaJ
Funciton: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
Locus tag: CE0674
Name: paaF
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: CE0675
Name: paaH
Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
paaA-paaB-paaC-paaD-paaE-paaG-paaJ-paaF-paaH -128 6.1 ACTGACCGGGCGGTCGGTTAGT CE0667
Kocuria rhizophila DC2201
Position: -210
Score: 5.57424
Sequence: ATTTTCAGAACGATCGGTCAGT
Position: -67
Score: 5.00629
Sequence: TCTGAACGAGCGGTCAGTTATT
Locus tag: KRH_02150
Name: paaA
Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: KRH_02140
Name: paaB
Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: KRH_02130
Name: paaC
Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: KRH_02120
Name: paaD
Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: KRH_02110
Name: paaE
Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
Locus tag: KRH_02100
Name: paaG
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
paaA-paaB-paaC-paaD-paaE-paaG -210 5.6 ATTTTCAGAACGATCGGTCAGT KRH_02150
-67 5 TCTGAACGAGCGGTCAGTTATT
Mycobacterium abscessus ATCC 19977
Position: -37
Score: 6.17773
Sequence: AATAACCGAACATTCGGTCGGT
Locus tag: MAB_0906
Name: paaA
Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: MAB_0907
Name: paaB
Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: MAB_0908
Name: paaC
Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: MAB_0909
Name: paaD
Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: MAB_0910
Name: paaE
Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
Locus tag: MAB_0911
Name: paaK
Funciton: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
paaA-paaB-paaC-paaD-paaE-paaK -37 6.2 AATAACCGAACATTCGGTCGGT MAB_0906
Nakamurella multipartita DSM 44233
Position: -70
Score: 6.0197
Sequence: TCTTACTGACCGTTCGGTCAGT
Locus tag: Namu_2491
Name: paaA
Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: Namu_2490
Name: paaB
Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: Namu_2489
Name: paaC
Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: Namu_2488
Name: paaD
Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: Namu_2487
Name: paaE
Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
Locus tag: Namu_2485
Name: paaZ
Funciton: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
paaA-paaB-paaC-paaD-paaE-paaZ -70 6 TCTTACTGACCGTTCGGTCAGT Namu_2491
Nocardia farcinica IFM 10152
Position: -49
Score: 5.81919
Sequence: ACTGACCGAATGTTCGGTAATA
Locus tag: nfa21570
Name: paaJ
Funciton: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
Locus tag: nfa21580
Name: paaF
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: nfa21590
Name: paaH
Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
Locus tag: nfa21600
Name: paaG
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: nfa21610
Name: paaA
Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: nfa21620
Name: paaB
Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: nfa21630
Name: paaC
Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: nfa21640
Name: paaD
Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: nfa21650
Name: paaE
Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
Locus tag: nfa21660
Name: paaK
Funciton: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
paaJ-paaF-paaH-paaG-paaA-paaB-paaC-paaD-paaE-paaK -49 5.8 ACTGACCGAATGTTCGGTAATA nfa21570
Rhodococcus erythropolis PR4
Position: -35
Score: 5.03299
Sequence: ACCAACCGATCATTCGGTAATA
Locus tag: RER_55500
Name: paaA
Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: RER_55490
Name: paaB
Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: RER_55480
Name: paaC
Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: RER_55470
Name: paaD
Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: RER_55460
Name: paaE
Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
Locus tag: RER_55450
Name: paaK
Funciton: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
paaA-paaB-paaC-paaD-paaE-paaK -35 5 ACCAACCGATCATTCGGTAATA RER_55500
Rhodococcus opacus B4
Position: 23
Score: 5.03299
Sequence: ACCAACCGATCATTCGGTAATA
Locus tag: ROP_25820
Name: paaA
Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: ROP_25810
Name: paaB
Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: ROP_25800
Name: paaC
Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: ROP_25790
Name: paaD
Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: ROP_25780
Name: paaE
Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
Locus tag: ROP_25770
Name: paaK
Funciton: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
paaA-paaB-paaC-paaD-paaE-paaK 23 5 ACCAACCGATCATTCGGTAATA ROP_25820
Rhodococcus sp. RHA1
Position: -34
Score: 5.03299
Sequence: ACCAACCGATCATTCGGTAATA
Locus tag: RHA1_ro02859
Name: paaA
Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: RHA1_ro02858
Name: paaB
Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: RHA1_ro02857
Name: paaC
Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: RHA1_ro02856
Name: paaD
Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: RHA1_ro02855
Name: paaE
Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
Locus tag: RHA1_ro02854
Name: paaK
Funciton: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
paaA-paaB-paaC-paaD-paaE-paaK -34 5 ACCAACCGATCATTCGGTAATA RHA1_ro02859
Saccharomonospora viridis DSM 43017
Position: -39
Score: 5.74156
Sequence: ACTTCCTGAACGTTCGGTTGGT
Locus tag: Svir_26540
Name: paaZ
Funciton: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
Locus tag: Svir_26530
Name: paaA
Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: Svir_26520
Name: paaB
Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: Svir_26510
Name: paaC
Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: Svir_26500
Name: paaD
Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: Svir_26490
Name: paaE
Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
paaZ-paaA-paaB-paaC-paaD-paaE -39 5.7 ACTTCCTGAACGTTCGGTTGGT Svir_26540
Saccharopolyspora erythraea NRRL 2338
Position: -186
Score: 5.62814
Sequence: ACTGACCGAGTAGTCGGTTATT
Position: -52
Score: 5.83397
Sequence: CGTTACCGAACGAACGGTCGGT
Locus tag: SACE_3543
Name: paaZ
Funciton: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
Locus tag: SACE_3544
Name: paaA
Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: SACE_3545
Name: paaB
Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: SACE_3546
Name: paaC
Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: SACE_3547
Name: paaD
Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: SACE_3548
Name: paaE
Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
paaZ-paaA-paaB-paaC-paaD-paaE -186 5.6 ACTGACCGAGTAGTCGGTTATT SACE_3543
-52 5.8 CGTTACCGAACGAACGGTCGGT
Streptomyces avermitilis MA-4680
Position: -52
Score: 5.93709
Sequence: GCGAACCGAACGATCGGTCGGT
Locus tag: SAV_4354
Name: paaA
Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: SAV_4353
Name: paaB
Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: SAV_4352
Name: paaC
Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: SAV_4351
Name: paaD
Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: SAV_4350
Name: paaE
Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
paaA-paaB-paaC-paaD-paaE -52 5.9 GCGAACCGAACGATCGGTCGGT SAV_4354
Streptomyces coelicolor A3(2)
Position: -157
Score: 5.27229
Sequence: CCCGACCGACCATTCGGTTAGC
Position: -34
Score: 5.31018
Sequence: ACCGAACGAATGGTCGGTTGGG
Locus tag: SCO7471
Name: paaA
Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: SCO7472
Name: paaB
Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: SCO7473
Name: paaC
Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: SCO7474
Name: paaD
Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: SCO7475
Name: paaE
Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
paaA-paaB-paaC-paaD-paaE -157 5.3 CCCGACCGACCATTCGGTTAGC SCO7471
-34 5.3 ACCGAACGAATGGTCGGTTGGG
Streptomyces griseus subsp. griseus NBRC 13350
Position: -34
Score: 6.14672
Sequence: AGGAACCGAACGATCGGTCGGT
Locus tag: SGR_3741
Name: paaA
Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: SGR_3740
Name: paaB
Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: SGR_3739
Name: paaC
Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: SGR_3738
Name: paaD
Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: SGR_3737
Name: paaE
Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
paaA-paaB-paaC-paaD-paaE -34 6.1 AGGAACCGAACGATCGGTCGGT SGR_3741
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