Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Pseudomonas stutzeri A1501

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF BirA Biotin Biotin biosynthesis 2 2
TF CadR-PbrR Lead ion, (Pb2+); Cadmium, ion (Cd2+) Lead resistance; Cadmium resistance 3 3
TF CueR Copper ion, (Cu+) Copper resistance 4 4
TF FruR Fructose-1-phosphate; Fructose-1,6-diphosphate Fructose utilization 2 2
TF GlcC Glycolate Glycolate utilization 2 4
TF GntR Gluconate Gluconate utilization 1 1
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 5 4
TF HexR1 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 4 4
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 2 2
TF LexA DNA damage SOS response 15 13
TF LiuR Branched-chain amino acid degradation 3 6
TF LldR L-lactate Lactate utilization 2 4
TF MerR Mercury ion, (Hg2+) Mercury resistance 1 1
TF MetR Homocysteine Methionine biosynthesis 4 3
TF ModE Molybdate Molybdenum homeostasis 1 1
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 4 5
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 5 5
TF PA1520 Xanthine utilization; Allantoin utilization 6 9
TF PhhR Tyrosine; Phenylalanine Aromatic amino acid metabolism 3 6
TF PhrR Blue light; Adenosylcobalamin Light-dependent DNA repair 6 3
TF PrpR 2-methylcitrate Methylcitrate utilization 2 2
TF PsrA Oleate Fatty acid degradation 9 8
TF RutR Uracil Pyrimidine utilization 8 4
TF RutR3 Uracil Pyrimidine utilization 3 2
TF RutR4 Uracil Pyrimidine utilization 2 2
TF SahR S-adenosylhomocysteine Methionine metabolism 1 1
TF YdcR 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 9 6
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 2 2
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA Glycine Glycine Glycine metabolism 1 2
RNA S15 Ribosome biogenesis 1 1
RNA SAH_riboswitch S-adenosylhomocysteine Methionine metabolism 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 2 1
RNA mini-ykkC Multidrug resistance 2 1
RNA ykkC-yxkD Multidrug resistance 4 2
RNA yybP-ykoY 1 1
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