Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Profile of regulator PdxR in Clostridia-3

Properties
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine biosynthesis
Effector: Pyridoxal-5-phosphate
Regulog: PdxR - Clostridia-3
Member of regulog collections
Transcription factor binding sites
Locus Tag Name Position Score Sequence
Bacteroides pectinophilus ATCC 43243
BACPEC_01644 pdxU -60 9.3 ATCTGGTAT-(15)-AACTGGCAT-(8)-TTGCCACAT
Blautia hansenii DSM 20583
BLAHAN_01809 pdxU -97 10.9 AACTGGACT-(15)-AACTGGCTA-(8)-TAGCCAGTT
Bryantella formatexigens DSM 14469
BRYFOR_03586 pdxU -125 10 AACTGGACT-(15)-AACTGGACA-(8)-TATCCGGAT
Clostridiales bacterium 1_7_47_FAA
Cbac1_010100020035 pdxU -182 10.5 AAGTGGACT-(15)-AACTGGATA-(8)-AGTCCACTT
Cbac1_010100001365 pdxU -133 10.3 AACTGGACT-(15)-AACTGGATA-(8)-ACTCCACTC
Clostridium bolteae ATCC BAA-613
CLOBOL_05306 pdxU -104 10.4 ATCTGGACT-(15)-AACTGGATA-(8)-AGTCCACCT
CLOBOL_04694 pdxU -124 11.4 AACTGGACT-(15)-AACTGGATA-(8)-ATTCCACTT
Clostridium nexile DSM 1787
CLONEX_02290 pdxU -97 9.4 AACTGGACT-(15)-AACTGGTAT-(8)-ATACCAGAA
Clostridium scindens ATCC 35704
CLOSCI_00017 pdxK -199 10.1 AACTGGCCT-(15)-ATCTGGACT-(8)-CATCCACTT
CLOSCI_02639 pdxU -95 10.9 AACTGGACT-(15)-AACTGGACA-(8)-TGACCACTT
Dorea formicigenerans ATCC 27755
DORFOR_02364 pdxS -141 12.3 AACTGGCTT-(15)-AACTGGATA-(8)-ATACCAGTT
Dorea longicatena DSM 13814
DORLON_00259 pdxS -56 12.1 AACTGGTAT-(15)-AACTGGATG-(8)-ATACCAGAT
DORLON_00405 pdxU -63 10.2 AACTGGTAT-(15)-AACTGGCTC-(8)-ATGCCACTA
DORLON_01651 pdxU -142 10.8 AACTGGCCT-(15)-AACTGGCTG-(8)-CATCCACTT
Eubacterium eligens ATCC 27750
EUBELI_20439 pdxS -106 12 TTCTGGCAT-(15)-AATTGGATA-(8)-TGACCAGTT
Eubacterium rectale ATCC 33656
EUBREC_0262 pdxU -170 10.6 AACTGGATA-(15)-AATTGGATA-(8)-ATGCCACAT
Roseburia intestinalis L1-82
ROSINTL182_03667 null -7 11.9 AACTGGCAT-(15)-AACTGGATG-(8)-CATCCAGTT
Ruminococcus gnavus ATCC 29149
RUMGNA_01775 pdxS -101 11.5 AACTGGCAT-(15)-AACTGGATG-(8)-AAGCCAATC
RUMGNA_02238 pdxU -75 10.9 AACTGGACT-(15)-AACTGGACA-(8)-TATCCACTT
Ruminococcus lactaris ATCC 29176
RUMLAC_01874 pdxS -132 10.4 TTCTGACCT-(15)-AATTGAATA-(8)-TAGTCACAA
RUMLAC_01106 pdxU -93 8.8 ATCTGACCT-(15)-AATTGACCA-(8)-GGTTCACAT
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Regulatory Sites [ FASTA format ] DOWNLOAD