Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Profile of regulator HmgQ in Shewanellaceae

Properties
Regulator family: LysR
Regulation mode: activator (repressor)
Biological process: Tyrosine degradation
Effector: 4-hydroxyphenylpyruvate
Regulog: HmgQ - Shewanellaceae
Member of regulog collections
Transcription factor binding sites
Locus Tag Name Position Score Sequence
Shewanella oneidensis MR-1
SO1965 hmgQ -79 5.6 ATCTAAAAAATAGAT
SO1963 hmgA -154 5.6 ATCTATTTTTTAGAT
Shewanella putrefaciens CN-32
Sputcn32_1671 hmgA -128 5.6 ATCTATTTTTTAGAT
Sputcn32_1672 hmgQ -79 5.6 ATCTAAAAAATAGAT
Shewanella sp W3-18-1
Sputw3181_2354 hmgA -128 5.8 ATCTAATTTTTAGAT
Sputw3181_2353 hmgQ -79 5.8 ATCTAAAAATTAGAT
Shewanella sp ANA-3
Shewana3_2480 hmgQ -79 5.8 ATCTAAAAATTAGAT
Shewana3_2481 hmgA -150 5.8 ATCTAATTTTTAGAT
Shewanella sp MR-4
Shewmr4_2291 hmgA -150 5.8 ATCTAATTTTTAGAT
Shewmr4_2290 hmgQ -79 5.8 ATCTAAAAATTAGAT
Shewanella sp MR-7
Shewmr7_2363 hmgA -150 5.5 ATCAAATTTTTAGAT
Shewmr7_2362 hmgQ -79 5.5 ATCTAAAAATTTGAT
Shewanella baltica OS155
Sbal_2615 hmgA -150 5.8 ATCTAATTTTTAGAT
Sbal_2614 hmgQ -79 5.8 ATCTAAAAATTAGAT
Shewanella denitrificans OS217
Sden_2162 hmgA -184 5.3 ATCTATAAATTTGAT
Sden_2161 hmgQ -77 5.3 ATCAAATTTATAGAT
Shewanella frigidimarina NCIMB 400
Sfri_2326 hmgA -168 5.6 ATCTAAAAAATAGAT
Sfri_2325 hmgQ -66 5.6 ATCTATTTTTTAGAT
Shewanella amazonensis SB2B
Sama_1570 hmgQ -66 5.8 ATCTAAAAATTAGAT
Sama_1569 hmgA -140 5.8 ATCTAATTTTTAGAT
Shewanella loihica PV-4
Shew_2154 hmgA -123 5.8 ATCTAAAATTTAGAT
Shew_2153 hmgQ -46 5.8 ATCTAAATTTTAGAT
Shewanella pealeana ATCC 700345
Spea_1874 hmgA -124 5 ATCTAAAAATATGAT
Spea_1875 hmgQ -46 5 ATCATATTTTTAGAT
Shewanella halifaxensis HAW-EB4
Shal_2409 hmgA -42 5.1 ATCAATTAAATAGAT
Shal_2409 hmgA -124 5.4 ATCTAAAAATTCGAT
Shal_2408 hmgQ -46 5.4 ATCGAATTTTTAGAT
Shewanella piezotolerans WP3
swp_2870 hmgA -123 5.6 ATCTAAAAAATAGAT
swp_2869 hmgQ -46 5.6 ATCTATTTTTTAGAT
Shewanella sediminis HAW-EB3
Ssed_2687 hpd -190 5.4 ATCTAAAATTTCGAT
Ssed_2686 hmgQ -47 5.4 ATCGAAATTTTAGAT
Shewanella woodyi ATCC 51908
Swoo_1932 hpd -265 5 ATCTAATATTTTGTT
Swoo_1933 hmgQ -47 5 AACAAAATATTAGAT
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Regulatory Sites [ FASTA format ] DOWNLOAD