Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Profile of regulator GcvA in Shewanellaceae

Properties
Regulator family: LysR
Regulation mode: activator (repressor)
Biological process: Glycine metabolism
Effector: Glycine
Regulog: GcvA - Shewanellaceae
Member of regulog collections
Transcription factor binding sites
Locus Tag Name Position Score Sequence
Shewanella oneidensis MR-1
SO_4674 kbl -148 5 ATTAGTTTTTATAAT
SO_3987 SO3987 -109 5.6 ATTAGTATAACTAAT
SO_3342 SO3342 -99 5.1 ATTATATATTCTAAT
SO_2753 SO2753 -256 5.2 ATTAGCTAAACTAAT
SO_2248 sdaA -199 4.4 ATCAAAAAAACTAAT
SO_0779 gcvT -296 5.5 ATGAGAAAATCTAAT
SO_1533 gcvA -38 5.6 ATTAGAAAAACTAAT
Shewanella putrefaciens CN-32
Sputcn32_0679 SO3987 -109 5.6 ATTAGTATAACTAAT
Sputcn32_2171 sdaA -202 4.4 ATCAAAAAAACTAAT
Sputcn32_3901 kbl -148 5 ATTAGTTTTTATAAT
Sputcn32_2677 SO3342 -85 5 ATTATTTTTTCTAAT
Sputcn32_1602 SO2753 -255 5.3 ATTAGCAAATCTAAT
Sputcn32_3211 gcvT -152 5.5 ATGAGAAAATCTAAT
Sputcn32_1282 gcvA -38 5.6 ATTAGAAAAACTAAT
Shewanella sp W3-18-1
Sputw3181_3492 SO3987 -109 5.6 ATTAGTATAACTAAT
Sputw3181_1837 sdaA -202 4.4 ATCAAAAAAACTAAT
Sputw3181_0050 kbl -148 5 ATTAGTTTTTATAAT
Sputw3181_1334 SO3342 -85 5 ATTATTTTTTCTAAT
Sputw3181_2420 SO2753 -255 5.3 ATTAGCAAATCTAAT
Sputw3181_0730 gcvT -152 5.5 ATGAGAAAATCTAAT
Sputw3181_2824 gcvA -38 5.6 ATTAGAAAAACTAAT
Shewanella sp ANA-3
Shewana3_0651 SO3987 -109 5.6 ATTAGTATAACTAAT
Shewana3_4104 kbl -148 5 ATTAGTTTTTATAAT
Shewana3_1204 SO3342 -99 4.8 ATGAAATATTCTAAT
Shewana3_1204 SO3342 -77 4.2 TTTAAATAATCTCAT
Shewana3_2536 SO2753 -255 5.2 ATTAGCAAAACTAAT
Shewana3_2295 sdaA -199 4.4 ATCAAAAAAACTAAT
Shewana3_3501 gcvT -296 5.5 ATGAGAAAATCTAAT
Shewana3_2894 gcvA -38 5.6 ATTAGAAAAACTAAT
Shewanella sp MR-4
Shewmr4_0652 SO3987 -109 5.6 ATTAGTATAACTAAT
Shewmr4_1725 sdaA -199 4.4 ATCAAAAAAACTAAT
Shewmr4_3900 kbl -148 5 ATTAGTTTTTATAAT
Shewmr4_1203 SO3342 -99 5.1 ATTAAATATTCTAAT
Shewmr4_1203 SO3342 -77 4.2 TTTAAATAATCTCAT
Shewmr4_2373 SO2753 -255 5.2 ATTAGCAAAACTAAT
Shewmr4_3331 gcvT -298 5.5 ATGAGAAAATCTAAT
Shewmr4_2724 gcvA -38 5.6 ATTAGAAAAACTAAT
Shewanella sp MR-7
Shewmr7_3370 SO3987 -109 5.6 ATTAGTATAACTAAT
Shewmr7_1804 sdaA -199 4.4 ATCAAAAAAACTAAT
Shewmr7_3992 kbl -148 5 ATTAGTTTTTATAAT
Shewmr7_1274 SO3342 -99 5.1 ATTAAATATTCTAAT
Shewmr7_1274 SO3342 -77 4.2 TTTAAATAATCTCAT
Shewmr7_2445 SO2753 -255 5.2 ATTAGCAAAACTAAT
Shewmr7_0622 gcvT -297 5.5 ATGAGAAAATCTAAT
Shewmr7_2795 gcvA -38 5.6 ATTAGAAAAACTAAT
Shewanella baltica OS155
Sbal_0787 SO3987 -109 5.6 ATTAGTATAACTAAT
Sbal_2417 sdaA -197 4.4 ATTTAAAAAACTAAT
Sbal_0058 kbl -148 5 ATTAGTTTTTATAAT
Sbal_3015 SO3342 -97 5 ATTAATTTTTCTAAT
Sbal_1741 SO2753 -254 5.6 ATTAGTAATTCTAAT
Sbal_0617 gcvT -348 5.5 ATGAGAAAATCTAAT
Sbal_1364 gcvA -38 5.6 ATTAGAAAAACTAAT
Shewanella denitrificans OS217
Sden_1946 sdaA -208 5.2 ATAAGAAAAACTAAT
Sden_3615 kbl -140 5.7 ATTAGAATTTCTAAT
Sden_0833 gcvT -142 5.6 ATTAGTAAAACTAAT
Sden_2565 gcvA -54 5.2 ATTAGAAAAACTTAT
Shewanella frigidimarina NCIMB 400
Sfri_2402 sdaA -140 4.5 ATCAAAAAATCTAAT
Sfri_3938 kbl -191 5 ATTAGTTTTTTTAAT
Sfri_0596 SO3342 -171 4.3 ATTATTAAAACTATT
Sfri_0596 SO3342 -96 5 ATTAGATTAATTAAT
Sfri_3151 gcvT -131 5.2 ATTAGCTAAACTAAT
Sfri_2783 gcvA -38 5.6 ATTAGAAAAACTAAT
Shewanella amazonensis SB2B
Sama_2429 gcvA -38 5.6 ATTAGAAAAACTAAT
Sama_2463 SO3342 -113 4.6 ATAATAAAAACTAAT
Sama_2091 SO2753 -247 5.6 ATTAGTTTAACTAAT
Sama_1325 sdaA -189 4.6 ATAAAAATAACTAAT
Sama_2721 gcvT -141 5.2 ATAAGAAAAACTAAT
Sama_0098 kbl -150 4.6 ATTAGTTTTTTTTAT
Shewanella loihica PV-4
Shew_2764 gcvA -38 5.6 ATTAGAAAAACTAAT
Shew_1154 SO3342 -97 5.1 ATTAAAAAATCTAAT
Shew_1522 SO2753 -336 5.6 ATTAGtaTtTCTAAT
Shew_1625 sdaA -184 4.1 TTGAAAAAAACTAAT
Shew_3064 gcvT -371 4.8 ATGAGAAAAAGTAAT
Shewanella pealeana ATCC 700345
Spea_2984 gcvA -38 5.6 ATTAGAAAAACTAAT
Spea_1141 SO3342 -96 5.1 ATTAGAAAATGTAAT
Spea_2569 SO2753 -79 5.3 ATAAGATTATCTAAT
Spea_1538 sdaA -232 5.7 ATTAGATTATCTAAT
Spea_0771 sdaC -400 5.6 ATTAGATTAACTAAT
Spea_3303 gcvT -233 5.4 ATGAGAAAAACTAAT
Spea_0107 kbl -147 5.6 ATTAGTTTAACTAAT
Shewanella halifaxensis HAW-EB4
Shal_3073 gcvA -38 5.6 ATTAGAAAAACTAAT
Shal_1186 SO3342 -96 5.1 ATTAGAAAATATAAT
Shal_1686 SO2753 -84 5.1 ATAAGATTATCTCAT
Shal_1608 sdaA -244 5.3 ATTAGCTTATCTAAT
Shal_0823 sdaC -399 5.3 ATTAGATTAGCTAAT
Shal_3375 gcvT -213 5.4 ATGAGAAAAACTAAT
Shal_4215 kbl -147 5.2 ATTAGTTTAGCTAAT
Shewanella piezotolerans WP3
swp_3612 gcvA -38 5.6 ATTAGAAAAACTAAT
swp_1289 SO3342 -95 5 ATTAGTTTTTTTAAT
swp_1825 SO2753 -310 5.6 ATTAGtTTtaCTAAT
swp_1748 sdaA -246 5.6 ATTAGTTTATCTAAT
swp_4263 sdaC -400 5.1 ATTAGATTGACTAAT
swp_0913 gcvT -163 5.4 ATGAGAAAAACTAAT
swp_5067 kbl -148 5.6 ATTAGTTTAACTAAT
Shewanella sediminis HAW-EB3
Ssed_0101 kbl -148 4.7 ATTAGTTTTATTCAT
Ssed_1246 SO3342 -97 5.1 ATTAAAATATCTAAT
Ssed_1852 SO2753 -278 5.2 ATTAGTTTTTCTTAT
Ssed_2838 sdaA -187 4.8 ATTAAAAAATCTCAT
Ssed_3675 gcvT -213 4.8 ATGAGAAAAAGTAAT
Ssed_3322 gcvA -38 5.6 ATTAGAAAAACTAAT
Shewanella woodyi ATCC 51908
Swoo_3471 gcvA -38 5.6 ATTAGAAAAACTAAT
Swoo_1346 SO3342 -173 4.6 ATTAGCTAAACTAAA
Swoo_1346 SO3342 -98 5.6 ATTAGAAAAACTAAT
Swoo_2736 SO2753 -280 5.6 ATTAGTTTATCTAAT
Swoo_1806 sdaA -206 4.7 CTTAGCTTATCTAAT
Swoo_1806 sdaA -179 4.8 ATTAAAAAAACTCAT
Swoo_3969 gcvT -229 4.8 ATGAGAAAAAGTAAT
Swoo_0065 kbl -148 4.6 ATTAGTTTTTTTTAT
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Regulatory Sites [ FASTA format ] DOWNLOAD