Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Profile of regulator LiuR in Sphingomonadales

Properties
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Sphingomonadales
Member of regulog collections
Transcription factor binding sites
Locus Tag Name Position Score Sequence
Erythrobacter litoralis HTCC2594
ELI_08825 null -71 5.1 GTTGACGGGCGCGTAAAG
ELI_00045 acdB -60 5.5 CTTTACGAAAACGTCAAC
ELI_09605 acdQ -44 5.1 CCTAACGTTAGCGTCAAG
ELI_00050 acdA -73 5.7 GTTGACGTTTTCGTAAAG
ELI_01475 acdA3 -58 5.6 GTTGACGCAAACGTAAGG
ELI_13505 etfB -72 5.7 GTTTACGTAAACGCAAGC
ELI_13505 etfB -78 6 CTTGACGTTTACGTAAAC
ELI_05890 liuR -37 5.3 CTTGACCTTTACGTAAAG
ELI_05890 liuR -31 4.7 CTTTACGTAAAGGGCATG
Erythrobacter sp. NAP1
NAP1_08185 null -70 5.4 GTTTACGCGAGCGTAAAG
NAP1_10032 acdQ -55 5 GATAACGTAAGCGTCAAC
NAP1_01850 null -37 5.6 CTTGACGTTTGCGTAAGC
NAP1_15383 acdB -52 5.5 CTTTACGGATACGTCAAC
NAP1_15378 acdA -90 5.6 GTTGACGTATCCGTAAAG
NAP1_09247 fpr -60 4.9 GTTGACGGACACGTCACC
NAP1_00605 acdA3 -32 5.3 GTTTACGTAAACGGGAAG
NAP1_12578 etfB -104 6 CTTGACGTTTACGTAAAC
NAP1_12578 etfB -98 5.7 GTTTACGTAAACGCAAGC
NAP1_05180 liuR -30 5.4 GTTCACGTAAAGGTAAAG
NAP1_05180 liuR -36 5.8 CTTGACGTTCACGTAAAG
NAP1_10032 acdQ -61 4.5 AATGACGATAACGTAAGC
Novosphingobium aromaticivorans DSM 12444
Saro_3457 paaG -315 5.1 CTTTACGTAAAGGTCATG
Saro_1064 null -36 5.2 GTTGACGTAAACGGGAGC
Saro_0999 acdQ -168 5.3 TTTTACGTTTACGTCAGC
Saro_0999 acdQ -162 4.3 GTTTACGTCAGCTTAGGG
Saro_3169 etfB -57 5.4 GTTTACGTAAGCGCAAAT
Saro_3169 etfB -63 5.9 GTTGACGTTTACGTAAGC
Saro_2106 liuR -37 5 ATTGACGCTTACGTAAGG
Saro_2106 liuR -31 4.5 GCTTACGTAAGGGGCAGG
Sphingopyxis alaskensis RB2256
Sala_1854 null -36 4.9 CATGACGTTTCCGTCAAC
Sala_0922 null -44 5.1 GCTTACGTTAAGGTCAAT
Sala_1185 etfD -99 4.7 GTTGACGGGCGCGTCAAT
Sala_1487 acdB3 -41 4.8 GTGAACGTAAAGGTAAAG
Sala_0922 null -50 4.4 CTTTCCGCTTACGTTAAG
Sala_1487 acdB3 -47 5.9 CTTTACGTGAACGTAAAG
Sala_1639 null -35 5.2 CTTGACGTTCACGTTAAG
Sala_1639 null -29 5 GTTCACGTTAAGGGAAAG
Sala_2313 acdH5 -36 5.9 CTTGACGTTTACGTCAAC
Sala_0761 null -23 4.8 GTTTACGTAAAGGGAGAG
Sala_0761 null -29 6 CTTGACGTTTACGTAAAG
Sala_1247 acdH -64 5.9 CTTGACGTTTACGTCAAC
Sala_1247 acdH -58 5.1 GTTTACGTCAACGTCGGG
Sala_1104 acdL2 -64 5.4 CTTGCCGTTTACGTAAAG
Sala_1104 acdL2 -58 5.1 GTTTACGTAAAGGTGAGC
Sala_3077 acdQ -63 5.5 GTTGACGCTTGCGTAAAG
Sala_0583 acdB4 -75 5.6 CCTTACGTTTACGTAAAG
Sala_3159 acdH3 -87 5.5 GTGGACGTAAACGTAAGG
Sala_3159 acdH3 -93 5.4 CTTGACGTGGACGTAAAC
Sala_0178 etfB -60 5.4 GTTTACGTAAGCGCAAAT
Sala_0178 etfB -66 5.9 GTTGACGTTTACGTAAGC
Sala_3074 acdH4 -34 6 GTTTACGTGAACGTAAAG
Sala_3074 acdH4 -28 4.4 GTGAACGTAAAGGGAAAG
Sala_1538 liuR -1 5.3 ATTGACGTTCACGTCAAC
Sala_1538 liuR 5 5.3 GTTCACGTCAACGGAAAC
Sala_0297 null -56 5.9 GTTGACGTAAACGTCAAT
Sala_1808 acdB2 -54 6.2 GTTGACGTAAACGTCAAC
Sala_0379 null -41 6 CTTGACGTTAACGTCAAC
Sala_1854 null -30 5.2 GTTTCCGTCAACGTAAGC
Sphingobium japonicum UT26S
SJA_C1-12520 fadD -44 5.3 CTTTACGCTTGCGTAAAG
SJA_C1-12520 fadD -38 4.5 GCTTGCGTAAAGGGAAAG
SJA_C1-17900 null -50 5.3 GTTTTCGTAAACGGAAAC
SJA_C1-20790 fadA -66 5.9 CTTTACGTAAACGTAAAT
SJA_C1-09700 liuR -37 6.1 CTTGACGTAAACGTAAAG
SJA_C1-17900 null -56 5.8 GTTGACGTTTTCGTAAAC
Sphingomonas wittichii RW1
Swit_4100 etfD -90 4.7 GTTGACGAAGGCGTCAAT
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Regulatory Sites [ FASTA format ] DOWNLOAD