Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Profile of regulator LiuR in Comamonadaceae

Properties
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Comamonadaceae
Member of regulog collections
Transcription factor binding sites
Locus Tag Name Position Score Sequence
Acidovorax avenae subsp. citrulli AAC00-1
Aave_4371 liuA -102 6.6 ATTGACGTTTACGTAAAC
Aave_4372 liuR -70 4.9 ATTGACGTGCGCGTCAAC
Aave_4371 liuA -96 4.8 GTTTACGTAAACGTAATG
Aave_2867 paaH -42 6.4 ATTGACGTTTACGTCAAC
Acidovorax sp. JS42
Ajs_3780 liuR -59 6 ATTGACGTTCACGTCAAC
Ajs_3779 liuA -134 6.6 ATTGACGTTTACGTAAAC
Ajs_3779 liuA -128 4.8 GTTTACGTAAACGTAATA
Ajs_2810 etfB -45 5.1 GTTTACGTAAACGTCAAG
Ajs_1606 paaH -31 5.3 GTTTACGTTAACGTAACT
Ajs_1606 paaH -37 6.1 ATTAACGTTTACGTTAAC
Comamonas testosteroni KF-1
CtesDRAFT_4404 liuR -74 6.6 ATTGACGTTAACGTAAAC
CtesDRAFT_4404 liuR -68 5 GTTAACGTAAACGTCAGT
CtesDRAFT_4405 paaI -50 6.6 ATTGACGTTTACGTAAAC
CtesDRAFT_4405 paaI -44 5.3 GTTTACGTAAACGTCAAT
CtesDRAFT_0547 etfB -44 5.3 GTTTACGTAAACGTCAAT
CtesDRAFT_1104 acdH -166 5.1 GTTTACGTAAACGTCAAA
CtesDRAFT_1104 acdH -172 5.1 CATTCCGTTTACGTAAAC
CtesDRAFT_5453 paaH -48 6.4 ATTGACGTTTACGTCAAC
CtesDRAFT_5453 paaH -42 5.1 GTTTACGTCAACGTCAAT
Delftia acidovorans SPH-1
Daci_5993 liuR -46 6.4 ATTGACGTTAACGTCAAC
Daci_5992 paaI -37 6.6 ATTGACGTTTACGTAAAC
Daci_5992 paaI -31 5 GTTTACGTAAACGTAATT
Daci_2390 etfB -44 5.3 GTTTACGTAAACGTCAAT
Daci_2390 etfB -50 5.2 ATTTCGGTTTACGTAAAC
Daci_4744 paaH -42 5.6 AGTTACGTTTACGTCAAC
Polaromonas naphthalenivorans CJ2
Pnap_0454 paaI -68 5.1 GTTTACGTAAACGTCAAG
Pnap_0454 paaI -74 6.6 ATTGACGTTTACGTAAAC
Pnap_0453 liuR -80 5.1 GTTTACGTAAACGTAAGA
Pnap_0453 liuR -86 6.3 TTTGACGTTTACGTAAAC
Pnap_3524 mcm -75 4.8 GTTTACGTAAACGTAATA
Pnap_3524 mcm -81 6.6 GTTGACGTTTACGTAAAC
Pnap_1223 etfB -44 5.1 GTTTACGTCAACGTCAAT
Pnap_1223 etfB -50 5.6 GCTTACGTTTACGTCAAC
Pnap_1609 paaH -80 5.5 GTTGACGTAAACGTCAAA
Pnap_1609 paaH -86 6.1 ATTGACGTTGACGTAAAC
Polaromonas sp. JS666
Bpro_4192 liuR -111 6.3 TTTGACGTTTACGTAAAC
Bpro_4191 paaI -135 6.6 ATTGACGTTTACGTAAAC
Bpro_4191 paaI -129 5.3 GTTTACGTAAACGTCAAT
Bpro_4054 mcm -41 5.7 GTTTACGTAAACGTCAAC
Bpro_4054 mcm -47 6.6 ATTGACGTTTACGTAAAC
Bpro_3143 etfB -40 5.1 GTTTACGTCAACGTCAAT
Bpro_3143 etfB -46 5.6 GCTTACGTTTACGTCAAC
Bpro_3093 paaH -63 5.5 GTTTACGTCAACGTCAAC
Bpro_3093 paaH -69 6.4 ATTGACGTTTACGTCAAC
Rhodoferax ferrireducens DSM 15236
Rfer_3843 liuR -86 5.3 GTTTACGTAAACGTCAAT
Rfer_3843 liuR -92 6.6 ATTGACGTTTACGTAAAC
Rfer_3612 mcm -85 5.1 GTTTACGTAAACGTCAAG
Rfer_3612 mcm -91 6.6 ATTGACGTTTACGTAAAC
Rfer_1957 etfB -77 5.5 GTTGACGTGCACGTCAAC
Rfer_2204 paaH -33 5.7 GTTTACGTTAACGTCAAT
Rfer_2204 paaH -39 6.5 ATTGACGTTTACGTTAAC
Variovorax paradoxus S110
Vapar_4735 liuR -115 6.6 ATTGACGTTTACGTAAAC
Leptothrix cholodnii SP-6
Lcho_4202 paaI -30 5.2 GTTAACGTAAACGTCAAT
Lcho_4202 paaI -36 6.6 ATTGACGTTAACGTAAAC
Lcho_4201 liuR -73 5.7 ACTTACGTTTACGTCAAC
Lcho_2559 paaH -93 5.5 GTTTACGTCAACGTCAAC
Lcho_2559 paaH -99 6.4 ATTGACGTTTACGTCAAC
Lcho_3844 mcm -72 5.3 GTTTACGTAAACGTCAAT
Lcho_3844 mcm -78 5.7 TATGACGTTTACGTAAAC
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Regulatory Sites [ FASTA format ] DOWNLOAD