Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Profile of regulator LiuR in Alteromonadales

Properties
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Alteromonadales
Member of regulog collections
Transcription factor binding sites
Locus Tag Name Position Score Sequence
Pseudoalteromonas atlantica T6c
Patl_2924 liuR -86 6.1 CTTTACGTAAACGTAAAG
Patl_2924 liuR -109 5.7 CTTTACCTTTACGTTAAG
Patl_0948 ivdB -102 5.4 ACTGACGTTAACGTAAAG
Patl_2923 ivdA -188 5.2 CTTAACGTAAAGGTAAAG
Patl_2923 ivdA -211 6.3 CTTTACGTTTACGTAAAG
Patl_2146 etfB -32 5.3 GTTGACGTGTACGTCAAC
Alteromonas macleodii 'Deep ecotype'
MADE_02411 liuR -142 5.5 ATTAACGTTAACGTAAAC
MADE_02411 liuR -164 5.9 CTTTACCTTAACGTAAAA
MADE_00995 etfD -138 5.7 GTTGACGTAAACGTCAAC
MADE_00995 etfD -176 6.2 GTTGACGTTAACGTAAAC
MADE_01905 ivdC -32 5.9 CTTTACGTTTACGTAAGG
MADE_02410 ivdA -76 5.7 TTTTACGTTAAGGTAAAG
MADE_02410 ivdA -98 5.6 GTTTACGTTAACGTTAAT
MADE_00996 etfB -228 6.2 GTTTACGTTAACGTCAAC
MADE_00996 etfB -266 5.9 GTTGACGTTTACGTCAAC
Colwellia psychrerythraea 34H
CPS_1604 liuR -73 6.4 CTTTACGTTAACGTAAAC
CPS_1604 liuR -67 4.7 GTTAACGTAAACTTAATA
CPS_3686 etfD -197 4.8 GTCAACGTCAACGTAAAC
CPS_3686 etfD -203 5.6 CTTTACGTCAACGTCAAC
CPS_1605 ivdA -91 4.8 GTTGACGTAAACTTAAAT
CPS_3687 etfB -77 5.7 GTTGACGTTGACGTAAAG
CPS_3687 etfB -83 5 GTTTACGTTGACGTTGAC
CPS_1582 bkdA1 -235 4.9 GTTAACGTGAAGGTAAAG
Alteromonadales bacterium TW-7
ATW7_12583 liuR -59 6 CTTTACCTTTACGTAAAC
ATW7_13183 etfD -191 4.7 CCTAACGTGTACGTCAAC
ATW7_13183 etfD -142 5.7 GTTGACGTAAACGTCAAC
ATW7_12588 ivdA -116 6 GTTGACGTTAGCGTAAAC
ATW7_03902 null -131 5.8 GTTTACGTAAACGTTAAC
ATW7_02937 acdH -123 5.4 GTTTACGTTCGAGTAAAG
ATW7_06903 gltB -277 6.3 GTTTACGTTTACGTAAAC
ATW7_07484 yciK -110 5.1 GTTAAACTTAACGTAAAG
ATW7_06658 ldh -238 5.3 GCTAACGTAAACGTAAAG
ATW7_06658 ldh -244 5.3 GGTTACGCTAACGTAAAC
ATW7_13178 etfB -47 5 GTTGACGTACACGTTAGG
ATW7_13178 etfB -96 5.9 GTTGACGTTTACGTCAAC
ATW7_13253 bkdA1 -134 6.3 CTTTACGTTAACGTAAAG
Pseudoalteromonas haloplanktis TAC125
PSHAa1453 liuR -60 6 CTTTACCTTTACGTAAAC
PSHAa1619 etfD -141 4.6 ATTGACGTAAACATCAAC
PSHAa1619 etfD -190 4.8 GCTGACGTGCACGTCAAC
PSHAa1454 ivdA -113 5.3 ATTTACGTTGGCGTAAAC
PSHAa0586 null -129 4.6 CTTTACTTAAAAGTTAAC
PSHAb0374 acdH -122 6.2 GTTTACGTTCACGTAAAG
PSHAa1343 yciK -110 5.1 GTTAAACTTAACGTAAAC
PSHAa1167 ldh -68 5 GTTCACGTAAGCGTAAGC
PSHAa1167 ldh -74 5.3 CGTTACGTTCACGTAAGC
PSHAa1618 etfB -47 4.8 GTTGACGTGCACGTCAGC
PSHAa1618 etfB -96 4.8 GTTGATGTTTACGTCAAT
PSHAa1632 bkdA1 -132 6.3 CTTTACGTTAACGTAAAG
Pseudoalteromonas tunicata D2
PTD2_19430 etfD -104 5.7 GTTGACGTAAACGTCAAC
PTD2_19757 liuR -55 6 CTTTACCTTTACGTAAAC
PTD2_19752 ivdA -66 5.3 ATTTACGTTGGCGTAAAC
PTD2_08574 null -140 5.6 GTTAACCTTTACGTAAAC
PTD2_03281 tyrP -54 6 CTTTACGTTTACGTTAAC
PTD2_10749 gltB -291 4.7 GTTTACGTAAACTTACTC
PTD2_10749 gltB -297 6.3 GTTTACGTTTACGTAAAC
PTD2_18015 yciK -80 5.4 GTTAAAGTTAACGTAAAC
PTD2_18100 ldh -246 6.1 TTTTACGTTAACGTAAAC
PTD2_19360 bkdA1 -224 6.4 GTTTACGTTAACGTAAAG
Idiomarina baltica OS145
OS145_12909 liuR -61 6.4 CTTTACGTTAACGTAAAC
OS145_12914 ivdA -34 6.4 GTTTACGTTAACGTAAAG
OS145_06047 ldh -140 5.3 GTTGCCGTTTACGTCAAC
OS145_01872 bkdA1 -61 5.7 CTTTACGTAAAGGTAAAG
Idiomarina loihiensis L2TR
IL0873 liuR -62 6.4 CTTTACGTTAACGTAAAC
IL0872 ivdA -34 6.4 GTTTACGTTAACGTAAAG
IL1680 bkdA1 -61 5.7 CTTTACGTAAAGGTAAAG
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Regulatory Sites [ FASTA format ] DOWNLOAD