Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Profile of regulator NtrC in Rhizobiales

Properties
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Regulog: NtrC - Rhizobiales
Member of regulog collections
Transcription factor binding sites
Locus Tag Name Position Score Sequence
Sinorhizobium meliloti 1021
SMb20436 narK -306 4.5 TGCACGATAATTGGGCA
SMb20436 narK -276 3.9 GGCCCAATATTTGACCA
SMc03806 glnK -214 4.9 TGCTTATATTTTAATCA
SMc01041 nifR3 -25 4 TGTCTAAAAATAGTGCA
SMc00947 glnB -286 4.4 TGACTAAGAAATGTGCA
SMc00947 glnB -254 4.1 TGCTCAAATAACATGCT
Rhizobium sp. NGR234
NGR_b17280 narK -299 4.1 TGCCCATCAAATGGGCA
NGR_b17280 narK -269 3.9 AGGCTAATATTTGGTCA
NGR_b11400 nrtC -338 3.8 CGCTGCTTTTTTAAGCA
NGR_b11400 nrtC -303 4.3 CGCACAATTATTGACCA
NGR_b15160 nrtA -297 4.4 CGCACAAAATTTCATCA
NGR_b15160 nrtA -269 3.8 TGCCTATTTCTGAGGCA
NGR_c31500 glnK -218 3.9 TGCCTGTTTTTTAATCT
NGR_b03900 uctA -286 4.7 TGATCATTTTATAAGCA
NGR_b03900 uctA -265 4.6 TGCACAAATTATGGGCG
NGR_c12950 nifR3 -25 4 TGTCTAAAAATAGTGCA
NGR_c14750 glnB -287 4.3 TGATGACTTATTATGCA
NGR_c14750 glnB -255 4.1 TGCTCAAATAACAGGCT
Rhizobium leguminosarum bv. viciae 3841
pRL100344 nrtA -227 4.2 AGCCTAAGAAATAGGCA
RL4565 glnK -201 3.8 TGCGCGTTATTTGTGCG
pRL90288 uctA -299 4 CGCACATTTTCTGTGCA
pRL90288 uctA -222 3.8 TGATTTATAATTTGGCA
RL2255 nifR3 -25 3.8 TGGCTAAAAATAATGCA
RL2393 glnB -269 4.2 TGCCTATATTTTCATCT
Rhizobium etli CFN 42
RHE_PF00452 nrtA -289 4.1 CGCACAAATGATAATCA
RHE_PF00452 nrtA -261 4.6 TGCATATTAAATAATCA
RHE_CH01783 narK -207 3.8 CGAACAAATTCTCAGCA
RHE_CH03974 glnK -200 4.4 TGCGCATTATTTGTGCG
RHE_PE00123 uctA -299 4.7 TGCTCAAAAATTTAGCA
RHE_CH01946 nifR3 -88 3.8 TGGCTAAAAATAATGCA
RHE_CH02103 glnB -287 3.8 AGACCCAAATTTGTGCA
RHE_CH02103 glnB -268 4.4 TGCTTATCTTTTAATCA
Agrobacterium tumefaciens str. C58 (Cereon)
Atu3905 nrtA -300 4.6 TGATTAAAATTTAATCG
Atu1444 nifR3 -31 4 TGTCTAAAAATAATGCA
Atu1769 glnB -297 4.1 AGACCAAATAATAGTCA
Atu1769 glnB -278 4.5 TGCACAAAATATAAACA
Mesorhizobium sp. BNC1
Meso_1450 narK -325 4.2 TGCCTAAGAAATAAACA
Meso_3237 glnK -203 4.7 TGCACATTTTTTGTTCA
Mesorhizobium loti MAFF303099
mll4247 glnK -202 5.2 TGCATAATTTTTGAGCA
mll0345 glnB -222 4.5 TGCCTAATTCTTATGCG
Brucella melitensis 16M
BMEI0167 amtB -195 5 AGCTTAAATTTTAAGCA
BMEI0864 nifR3 -48 3.8 TGATTAAACTGTATGCG
BMEI0864 nifR3 -21 3.9 TGCATATCAAATAGGCG
BMEI0978 glnB -220 5.2 TGCATAATTTTTAAGCA
Rhodopseudomonas palustris CGA009
RPA1473 dppA -132 4.9 TGCACATTATTTATGCA
RPA3669 urtA -246 4 AGTGCAATAATTAATCA
RPA0274 glnK -240 4.4 TGCCTGATTATTGATCA
RPA1410 uctA -243 3.7 TGCACATTGTTTGTGCC
RPA2591 nifR3 -92 4.6 TGCTCAAACATTGAGCG
RPA3669 urtA -216 4.3 TGATCAATTGTTGTGCT
RPA2966 glnB -320 4.8 TGCTGAATAATTGATCA
Bradyrhizobium japonicum USDA 110
blr1448 urtA -111 4.4 TGCTCAATAAATGAACT
blr1448 urtA -67 4.9 TGCACAAATCTTGAGCA
bll4571 nirA -202 4 CGTCTAAATTTTGGGCT
blr2806 narK -292 3.9 AGCTCAATCCTTGTGCG
blr0612 glnK -180 4.1 TGCCCTCATTTTGAGCA
blr1036 dppA -190 4.5 CGATGAAATTTTGAGCA
blr4948 glnB -290 3.6 TGCCTATTTCGTAGTCT
Bradyrhizobium sp. BTAi1
BBta_0716 dppA -161 4.8 AGCTCAATAAATAAGCA
BBta_7018 urtA -175 4.7 TGCTCAAAAAATGGGCT
BBta_7018 urtA -219 3.9 TGCACAAATTTGGCGCT
BBta_7018 urtA -248 4.4 TGCTTTAAAATTAGTCA
BBta_4137 nirA -278 4.1 CGTACAAATTTTAGGCG
BBta_2817 nrtA -314 4.4 CGCCCACTTTTTGTGCA
BBta_0293 glnK -335 4.7 TGCGCAATTTTTGCGCA
BBta_0739 uctA -264 4 TGCCAATTTCTTGGGCA
BBta_4068 nifR3 -149 4.5 TGCCCAAGAATTGTGCT
BBta_4580 glnB -300 3.8 TGCACAACGTTTGATCT
Nitrobacter winogradskyi Nb-255
Nwi_1443 nifR3 -47 4.7 TGCCTAATAAATAAGCT
Nwi_1903 glnB -298 4.5 CGCACAAAAATTGAACA
Azorhizobium caulinodans ORS 571
AZC_1511 dppA -159 4.8 TGCTCAATTTTTAATCT
AZC_0686 nrtA -242 4.6 TGCTCATTTTTTGATCT
AZC_4227 glnK -241 4 CGCCTATTTTTAAGGCA
AZC_1758 urtA -179 4.6 TGCCTAAATTATAGTCA
AZC_4397 uctA -230 3.8 TGGCTAAAATTTAGACA
AZC_1602 glnB -134 4.4 CGCATACTATTTAGGCA
Xanthobacter autotrophicus Py2
Xaut_4660 dppA -159 4.9 TGCGTAATTATTGTGCA
Xaut_2504 nrtA -312 3.8 CGCACAATTTGAATGCA
Xaut_2504 nrtA -252 4.4 CGCCCAAATTTTCATCA
Xaut_1084 nrtA -292 3.9 TGCCCAATCCATAAGCT
Xaut_1084 nrtA -270 4.6 TGCATATTTTTTGTGCG
Xaut_4149 urtA -331 3.8 TGCCCTCAAAATAGGCA
Xaut_2209 glnK -244 4.7 AGATCAATAATTAGGCA
Xaut_1227 uctA -300 4.8 TGCTTAAATTTTGATCG
Xaut_4401 nifR3 -39 3.8 TGTCTAAGATGTAGGCA
Xaut_3586 glnB -138 4.2 AGCCTATTTCATGAGCA
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Regulatory Sites [ FASTA format ] DOWNLOAD