Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Profile of regulator NtrC in Comamonadaceae

Properties
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Regulog: NtrC - Comamonadaceae
Member of regulog collections
Transcription factor binding sites
Locus Tag Name Position Score Sequence
Acidovorax avenae subsp. citrulli AAC00-1
Aave_1442 glnA -207 5.6 TGCACGATTTTGGTGCG
Aave_1442 glnA -184 4.9 GGCCCCGAATTGGTGCG
Aave_0232 CHP02001 -180 5.1 CGCACCATTCGGGTGCG
Aave_0232 CHP02001 -108 4.6 CGCACCCATTCGGAGCG
Aave_2147 nrtA -282 4.8 CGCACGAAGAGGGTGCA
Aave_2107 nasD -331 4.4 TGCACCGAAGCGGTTCA
Acidovorax sp. JS42
Ajs_1189 glnA -134 5.1 TGCACGCGTTTGGTGCG
Ajs_1189 glnA -206 5.7 TGCACCAAACGGGTGCA
Ajs_0162 CHP02001 -155 5 TGCACCAGGCTGGTGCG
Ajs_2839 nasD -328 4.5 TGCACCACGGCGGTGCG
Ajs_2842 ybiB -120 4.6 GGCACCACTGCGGTGCA
Ajs_2831 nrtA -314 5 TGCACAAATGCGGTGCA
Comamonas testosteroni KF-1
CtesDRAFT_0725 glnA -238 4.7 TTCGCCAAGATGGTGCA
CtesDRAFT_0725 glnA -261 5.9 TGCACCACATTGGTGCA
CtesDRAFT_4075 CHP02001 -288 4.9 ATCACCTGTTTGGTGCA
CtesDRAFT_4075 CHP02001 -228 5.6 CGCACCATCTTGGTGCA
CtesDRAFT_4523 nrtA -232 4.5 TGCACCAAATATGGGCC
CtesDRAFT_4526 nasD -219 4.8 TGCACAAAAGCAGTGCA
Delftia acidovorans SPH-1
Daci_0301 CHP02001 -208 5.4 TGCACTATCTTGGTGCA
Daci_0301 CHP02001 -136 4.7 TGCACAAAGCCGGTGCA
Daci_5002 glnA -84 4.7 TGCACTCAATGGATGCA
Daci_5002 glnA -286 5.8 TGCACTCATTTGGTGCA
Daci_5002 glnA -214 5.6 TGCACCGATTTGGTGAA
Daci_2377 nrtA -277 4.9 AGCACCGACTTGGTGCC
Daci_2371 nasD -252 4.6 CGCACCGCTTTGATGCA
Polaromonas naphthalenivorans CJ2
Pnap_2780 glnA -250 4.6 GGCCCTGAATTGGTGCG
Pnap_2780 glnA -200 5 CGCACTTTTTTGGTGCT
Pnap_0120 glnK -319 4.7 TGCATCAAAGTTGTGCA
Pnap_0120 glnK -295 4.5 TGCATCATGATGGTGCG
Pnap_1414 nrtA -334 4.7 GGCGCCGAAATGGTGCA
Polaromonas sp. JS666
Bpro_1807 glnA -216 5.6 TGCGCTAAATTGGTGCA
Bpro_1807 glnA -242 4.9 GGCCCCGAATTGGTGCG
Bpro_0182 CHP02001 -153 5.5 TGCGCCAACTTGGTGCA
Bpro_3273 narK -145 4.8 TGCACGCAATATGTGCA
Bpro_3273 narK -48 4.8 TGCACTAACTTTGTGAA
Rhodoferax ferrireducens DSM 15236
Rfer_2979 glnA -184 5.3 CGCACTTAATTGGTGCT
Rfer_2979 glnA -236 4.7 GGCCCTGAATTGGTGCA
Rfer_0472 glnK -203 5 TGCACCAAGTATGTGCG
Rfer_2554 nrtA -315 5.1 TGCACAAAACTGGTGCC
Variovorax paradoxus S110
Vapar_1632 glnA -139 5.7 TGCACCAATTTGGTGAT
Vapar_0217 CHP02001 -207 4.9 CTCACCATTGTGGTGCG
Vapar_2849 nasD -189 4.6 AGCACTGTTTTGGTGAG
Vapar_3522 nrtA -313 4.3 CGCACAACAAGCGTGCA
Vapar_3526 narK -166 4.6 AGCACCGCTTTGGTGAG
Verminephrobacter eiseniae EF01-2
Veis_3315 CHP02001 -202 4.4 CTCCCCGAATGGGTGCG
Veis_3154 glnA -219 5.1 TGCACGCATTTGGCGCA
Veis_3154 glnA -196 4.9 GGCCCCGAATTGGTGCG
Methylibium petroleiphilum PM1
Mpe_A2076 glnA -244 4.6 GGCCCCGAAATGGTGCG
Leptothrix cholodnii SP-6
Lcho_3581 glnA -178 5.1 CGCACCATGTTTGTGCA
Lcho_3581 glnA -225 4.6 GGCCCCGAAATGGTGCG
Lcho_3942 glnK -193 5.3 TGCACTGAATTGGTGCC
Lcho_3843 nrtA -300 4.4 TGCACGCCCATGGTGCG
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Regulatory Sites [ FASTA format ] DOWNLOAD