Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Profile of regulator NtrC in Pseudomonadaceae

Properties
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Regulog: NtrC - Pseudomonadaceae
Member of regulog collections
Transcription factor binding sites
Locus Tag Name Position Score Sequence
Pseudomonas aeruginosa PAO1
PA1730 ybdK -118 4.5 TGCACCAGACTGGGGCG
PA5124 ntrB -182 5.4 CGCACCAGATTGGTGCG
PA5288 glnK -338 5.2 TGCGCCTATTTGGTGCG
PA5119 glnA -207 5.3 AGCACCATAACGGTGCA
PA5119 glnA -220 5.1 TGCACCAACATGGAGCA
Pseudomonas entomophila L48
PSEEN0571 alsT -133 5.5 CGCACCAAAATGGAGCA
PSEEN3762 amtB2 -69 4.7 GGCACCGATTCGGTGCA
PSEEN0390 glnA -236 5.8 CGCACCAATATGGTGCA
PSEEN0387 ntrB -71 4.4 AGCACGTTATCCGTGCG
PSEEN0387 ntrB -245 5.5 TGCTCCATATTGGTGCA
PSEEN5376 glnK -310 5.3 CGCACCGATTTTGTGCG
Pseudomonas putida KT2440
PP2106 amtB2 -72 4.7 GGCACCGATTCGGTGCA
PP2688 ybdK -256 4.1 CGCCCTTTTTTGATGCG
PP2688 ybdK -295 4.5 CGCCCCATTTCGGTTCA
PP5046 glnA -205 4.4 CGCATCGTAAGGGTGCA
PP5046 glnA -236 5.3 CGCACCCTATTGGTGCG
PP5047 ntrB -257 4.7 TGCTCTATCTTGGTGCA
PP5234 glnK -299 4.6 TGCACATTTTTCGCGCA
PP5234 glnK -266 5.4 CGCACCGAAATTGTGCA
Pseudomonas syringae pv. tomato str. DC3000
PSPTO5500 alsT -47 4.8 TGCACCGGTATAGTGCG
PSPTO2059 ybdK -119 5 TGCACAGGAATGGTGCG
PSPTO0359 glnA -208 4.9 AGCGCCATAACGGTGCG
PSPTO0353 ntrB -50 4.2 AGCACCAGCATTGCGCG
PSPTO0353 ntrB -267 5.3 AGCACCTTTTTGGTGCA
PSPTO0217 glnK -315 4.9 AGCACCATTGTTGTGCA
PSPTO0217 glnK -348 4.6 TGCACGCTTATGGCGCG
Pseudomonas fluorescens Pf-5
PFL_6139 alsT -210 4.8 CGCACCGGTATAGTGCG
PFL_4230 amtB2 -54 4.6 CGCGCCAAAACGGTTCA
PFL_2518 ybdK -283 4.5 TGCACCGATTCTGTTCG
PFL_0386 glnA -235 4.5 TGCACCAAAACGGGTCA
PFL_0378 ntrB -246 5.4 TGCACTATATTGGTGCA
PFL_6020 glnK -347 4.5 TGCACGTTTTTCGCGCA
PFL_6020 glnK -314 5.3 CGCACCGTTTTTGTGCG
Pseudomonas mendocina ymp
Pmen_2597 ybdK -120 5.2 CGCACCGAGATGGTGCG
Pmen_4140 glnA -202 4.4 AGCCCTTAAATGGTGCA
Pmen_4143 ntrB -256 5.6 CGCACCTTTATGGTGCA
Pmen_0259 glnK -341 5 TGCACAATTTTTGAGCA
Pmen_4140 glnA -233 4.1 CGCACCAAAATAGGTCT
Pmen_0259 glnK -308 5.6 CGCACCAAATTTGTGCG
Pseudomonas stutzeri A1501
PST_0353 glnA -212 4.9 CGCACCATTAACGCGCA
PST_0350 ntrB 1 5.2 TGCACCTGTTTGGTGCG
PST_0502 glnK -329 4.8 TGCACAAAAAATGAGCA
PST_0502 glnK -296 5.5 CGCACCATTTTCGTGCG
PST_0353 glnA -243 4.6 CGCACCAAAACAATGCG
Azotobacter vinelandii AvOP
Avin_37690 ybdK -298 4.6 TGCATTTTTTTGGTGCG
Avin_45850 glnA -100 4.1 TGCTCCCTTGTGGCGCG
Avin_45850 glnA -232 4.1 CGCACCAAAATGAAACA
Avin_45890 ntrB -179 4.2 CGCCCTGTTTTGGGGCG
Avin_47790 glnK -296 4.9 CGCACGGTTTTCGTGCG
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Regulatory Sites [ FASTA format ] DOWNLOAD