Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of Fur in Ralstonia solanacearum GMI1000

Properties
Regulator type: Transcription factor
TF locus tag: RSp0247, RSc2747
Regulator family: FUR
Regulation mode: repressor (activator)
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Regulog: Fur - Ralstonia
Statistics of regulated genes:
- Genes 27
- Operons 14
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 94 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -59
Score: 4.6
Sequence: AGTGATAATCACTCTCATT
Locus tag: RS03023
Name: RSp0100
Funciton: putative iron-regulated TonB-dependent transporter
RSp0100
putative iron-regulated TonB-dependent transporter

Position: -56
Score: 5.4
Sequence: AATAAGAATTCTTCTCATT
Locus tag: RS00176
Name: RSc2918
Funciton: Putative extracytoplasmic function sigma factor (iron-regulated) transcription regulator protein
Locus tag: RS00175
Name: RSc2919
Funciton: Putative iron transport-sensory transduction transmembrane protein
Locus tag: RS00173
Name: RSc2920
Funciton: Probable iron-regulated ABC transporter, composite ATP-binding transmembrane protein, hydroxamate-type
RSc2918
Putative extracytoplasmic function sigma factor (iron-regulated) transcription regulator protein
RSc2919
Putative iron transport-sensory transduction transmembrane protein
RSc2920
Probable iron-regulated ABC transporter, composite ATP-binding transmembrane protein, hydroxamate-type

Position: -81
Score: 5.3
Sequence: AACGAGAATCATTCTCATT
Locus tag: RS00511
Name: RSc3067
Funciton: Uncharacterized iron-regulated membrane protein, DUF337 family
RSc3067
Uncharacterized iron-regulated membrane protein, DUF337 family

Position: -223
Score: 5.5
Sequence: ATTGATAATGATTCTTATT
Position: -217
Score: 4.1
Sequence: AATGATTCTTATTTGCATT
Locus tag: RS03722
Name: RSp0244
Funciton: TonB-dependent outer-membrane hemin transporter
Locus tag: RS03723
Name: RSp0243
Funciton: hemin transport protein HmuS; putative Hemin-degrading
RSp0244
TonB-dependent outer-membrane hemin transporter
RSp0243
hemin transport protein HmuS; putative Hemin-degrading

Position: -82
Score: 5.5
Sequence: AATGATAACGATTCTCATT
Locus tag: RSc1966
Name: hemP
Funciton: putative hemin uptake protein
hemP
putative hemin uptake protein

Position: -33
Score: 5
Sequence: AATGAGAATCATTTTCATC
Locus tag: RS04237
Name: RSc1811
Funciton: Putative siderophore synthetase protein
RSc1811
Putative siderophore synthetase protein

Position: -126
Score: 5.6
Sequence: AATGAGAATGATTATCAAT
Locus tag: RS04230
Name: RSc1807
Funciton: Probable iron-regulated TonB-dependent transporter
Locus tag: RS04232
Name: RSc1808
Funciton: Probable iron-regulated ABC transporter, composite ATP-binding transmembrane protein
Locus tag: RS04233
Name: RSc1809
Funciton: Probable iron-regulated ABC transporter, composite ATP-binding transmembrane protein
RSc1807
Probable iron-regulated TonB-dependent transporter
RSc1808
Probable iron-regulated ABC transporter, composite ATP-binding transmembrane protein
RSc1809
Probable iron-regulated ABC transporter, composite ATP-binding transmembrane protein

Position: -77
Score: 5
Sequence: AACAAGAATTGTTCTCATT
Locus tag: RSc0349
Name: bfd
Funciton: Bacterioferritin-associated ferredoxin
Locus tag: RSc0350
Name: bfr
Funciton: Bacterioferritin
bfd
Bacterioferritin-associated ferredoxin
bfr
Bacterioferritin

Position: -254
Score: 5
Sequence: ATCAAGAATGATTCTCATT
Position: -70
Score: 5.6
Sequence: ATTGAGAATAATTCTCATT
Locus tag: RS00871
Name: RSp0414
Funciton: putative iron-regulated TonB-dependent siderophore transporter
RSp0414
putative iron-regulated TonB-dependent siderophore transporter

Position: -153
Score: 5.1
Sequence: AATGGGAATTGTTCTCATT
Locus tag: RS02469
Name: RSp1062
Funciton: putative iron-regulated TonB-dependent transporter
RSp1062
putative iron-regulated TonB-dependent transporter

Position: -237
Score: 5.6
Sequence: AATGAGAATTATTCTCAAT
Position: -53
Score: 5
Sequence: AATGAGAATCATTCTTGAT
Locus tag: RS00872
Name: RSp0415
Funciton: Probable RNA polymerase sigma factor FecI
Locus tag: RS00873
Name: RSp0416
Funciton: putative iron-regulated TonB-dependent siderophore transporter
RSp0415
Probable RNA polymerase sigma factor FecI
RSp0416
putative iron-regulated TonB-dependent siderophore transporter

Position: -48
Score: 5.2
Sequence: AATGAGAATCATTATCATC
Locus tag: RS02198
Name: RSp1640
Funciton: putative transmembrane lipoprotein
Locus tag: RS02199
Name: RSp1641
Funciton: hypothetical protein
Locus tag: RS02200
Name: RSp1642
Funciton: Uncharacterized iron-regulated membrane protein, DUF337 family
RSp1640
putative transmembrane lipoprotein
RSp1641
hypothetical protein
RSp1642
Uncharacterized iron-regulated membrane protein, DUF337 family

Position: -66
Score: 4.9
Sequence: AATGAAAACGATTCGCATT
Locus tag: RS03714
Name: RSp0252
Funciton: Ferrous iron transport protein A
Locus tag: RSp0251
Name: feoB
Funciton: Ferrous iron transport protein B
Locus tag: RS03716
Name: RSp0250
Funciton: putative transmembrane protein involved in ferrous iron transport
RSp0252
Ferrous iron transport protein A
feoB
Ferrous iron transport protein B
RSp0250
putative transmembrane protein involved in ferrous iron transport

Position: -287
Score: 5
Sequence: AATGGGAATCATTATCGTT
Locus tag: RSc1963
Name: tonB
Funciton: Component of outer membrane metal uptake system, TonB family
Locus tag: RSc1964
Name: exbB1
Funciton: Component of outer membrane metal uptake system, ExbB family
Locus tag: RSc1965
Name: exbD1
Funciton: Component of outer membrane metal uptake system, ExbD family
tonB
Component of outer membrane metal uptake system, TonB family
exbB1
Component of outer membrane metal uptake system, ExbB family
exbD1
Component of outer membrane metal uptake system, ExbD family
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