Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of LexA in Paenibacillus sp. JDR-2

Properties
Regulator type: Transcription factor
TF locus tag: Pjdr2_2621
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Bacillales
Statistics of regulated genes:
- Genes 12
- Operons 9
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 206 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -66
Score: 4.2
Sequence: GCGAACATACATTCGG
Position: -37
Score: 4.7
Sequence: ACGAACATACTTTCGC
Locus tag: Pjdr2_3737
Name: yqjW
Funciton: DNA polymerase IV (EC 2.7.7.7)
yqjW
DNA polymerase IV (EC 2.7.7.7)

Position: -129
Score: 4.2
Sequence: TAGAACCGGAGTTCGT
Position: -113
Score: 5.1
Sequence: ACAAACATAAGTTCTT
Position: -97
Score: 4.8
Sequence: AAAAACAAAAGTTCGC
Position: -67
Score: 5
Sequence: GCAAACATTTGTTCGT
Position: -28
Score: 4.7
Sequence: CAGAACAAACGTTCGG
Locus tag: Pjdr2_2622
Name: Pjdr2_2622
Funciton: Peptidoglycan-binding protein
Locus tag: Pjdr2_2623
Name: ynzC
Funciton: Hypothetical protein
Pjdr2_2622
Peptidoglycan-binding protein
ynzC
Hypothetical protein

Position: -35
Score: 5.2
Sequence: AAGAACATATGTTCTC
Locus tag: Pjdr2_4666
Name: vsr
Funciton: DNA mismatch endonuclease
vsr
DNA mismatch endonuclease

Position: -329
Score: 4.3
Sequence: CGAAACATGCGTTCGA
Locus tag: Pjdr2_4818
Name: uvrC
Funciton: Excinuclease ABC subunit C
uvrC
Excinuclease ABC subunit C

Position: -297
Score: 3.9
Sequence: GCGAACAATAATTTGT
Position: -84
Score: 4.9
Sequence: ACGAATGTATGTTCGA
Locus tag: Pjdr2_3379
Name: recA
Funciton: Recombination protein A
recA
Recombination protein A

Position: -172
Score: 4
Sequence: GCGAATTTATGTTATT
Locus tag: Pjdr2_2492
Name: parE
Funciton: Topoisomerase IV subunit B (EC 5.99.1.-)
Locus tag: Pjdr2_2493
Name: parC
Funciton: Topoisomerase IV subunit A (EC 5.99.1.-)
parE
Topoisomerase IV subunit B (EC 5.99.1.-)
parC
Topoisomerase IV subunit A (EC 5.99.1.-)

Position: -157
Score: 4.4
Sequence: CCGAACGTTTGTTCTG
Position: -118
Score: 5.1
Sequence: ACGAACAAATGTTTGC
Position: -72
Score: 5.1
Sequence: AAGAACTTATGTTTGT
Locus tag: Pjdr2_2621
Name: lexA
Funciton: SOS-response transcriptional repressor
lexA
SOS-response transcriptional repressor

Position: -42
Score: 4.8
Sequence: TCGAACGTTTGTTCGC
Locus tag: Pjdr2_1533
Name: yhjD
Funciton: Hypothetical protein
yhjD
Hypothetical protein

Position: -90
Score: 5.1
Sequence: CAGAACATACGTTTGT
Locus tag: Pjdr2_2219
Name: addB
Funciton: ATP-dependent deoxyribonuclease (subunit B)
Locus tag: Pjdr2_2220
Name: addA
Funciton: ATP-dependent deoxyribonuclease (subunit A)
addB
ATP-dependent deoxyribonuclease (subunit B)
addA
ATP-dependent deoxyribonuclease (subunit A)
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