Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of LexA in Bacillus pumilus SAFR-032

Properties
Regulator type: Transcription factor
TF locus tag: BPUM_1686
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Bacillales
Statistics of regulated genes:
- Genes 36
- Operons 19
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 206 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -29
Score: 4.9
Sequence: CAGAACATACGTTCTA
Locus tag: BPUM_2102
Name: yqjW
Funciton: DNA polymerase IV (EC 2.7.7.7)
yqjW
DNA polymerase IV (EC 2.7.7.7)

Position: -169
Score: 4
Sequence: AAGAACGCATATTCGT
Locus tag: BPUM_2062
Name: ypuD
Funciton: Hypothetical protein
ypuD
Hypothetical protein

Position: -431
Score: 5.1
Sequence: ACAAACATAGGTTCGA
Position: -401
Score: 4.4
Sequence: AGAAACGTTTGTTCGT
Position: -362
Score: 4
Sequence: ACGAACACACATTCTA
Locus tag: BPUM_1688
Name: yneB
Funciton: Site-specific recombinase, DNA invertase
Locus tag: BPUM_1689
Name: ynzC
Funciton: Hypothetical protein
Locus tag: BPUM_1690
Name: tkt
Funciton: Transketolase (EC 2.2.1.1)
Locus tag: BPUM_1691
Name: yneE
Funciton: Hypothetical protein
Locus tag: BPUM_1692
Name: yneF
Funciton: Hypothetical protein
yneB
Site-specific recombinase, DNA invertase
ynzC
Hypothetical protein
tkt
Transketolase (EC 2.2.1.1)
yneE
Hypothetical protein
yneF
Hypothetical protein

Position: -34
Score: 4.5
Sequence: AAGAACGTGTGTTCTA
Locus tag: BPUM_0989
Name: yhjD
Funciton: Hypothetical protein
yhjD
Hypothetical protein

Position: -30
Score: 5.2
Sequence: TAGAACATACGTTTGT
Locus tag: BPUM_1157
Name: xkdA
Funciton: Phage-like element PBSX protein xkdA
xkdA
Phage-like element PBSX protein xkdA

Position: -62
Score: 5.2
Sequence: TAAAACAAATGTTCGT
Locus tag: BPUM_2506
Name: uvrC
Funciton: Excinuclease ABC subunit C
uvrC
Excinuclease ABC subunit C

Position: -82
Score: 4.9
Sequence: CCGAACTTTAGTTCGT
Locus tag: BPUM_3148
Name: uvrB
Funciton: Excinuclease ABC subunit B
Locus tag: BPUM_3147
Name: uvrA
Funciton: Excinuclease ABC subunit A
uvrB
Excinuclease ABC subunit B
uvrA
Excinuclease ABC subunit A

Position: -145
Score: 4.4
Sequence: CAGAACGATTGTTCTT
Locus tag: BPUM_2304
Name: sda
Funciton: Sporulation inhibitor sda
sda
Sporulation inhibitor sda

Position: -88
Score: 5.2
Sequence: TCGAATATGTGTTCGT
Locus tag: BPUM_1598
Name: recA
Funciton: Recombination protein A
recA
Recombination protein A

Position: -246
Score: 4.8
Sequence: TAGAACATTTGTTCTG
Locus tag: BPUM_1709
Name: parE
Funciton: Topoisomerase IV subunit B (EC 5.99.1.-)
Locus tag: BPUM_1710
Name: parC
Funciton: Topoisomerase IV subunit A (EC 5.99.1.-)
parE
Topoisomerase IV subunit B (EC 5.99.1.-)
parC
Topoisomerase IV subunit A (EC 5.99.1.-)

Position: -142
Score: 4.6
Sequence: TAGAATGTGTGTTCGT
Position: -103
Score: 4.4
Sequence: ACGAACAAACGTTTCT
Position: -73
Score: 5.1
Sequence: TCGAACCTATGTTTGT
Locus tag: BPUM_1686
Name: lexA
Funciton: SOS-response transcriptional repressor
lexA
SOS-response transcriptional repressor

Position: -277
Score: 4.4
Sequence: AGGAATATTCGTTCGC
Position: -241
Score: 3.9
Sequence: ACGAATAAGGATTCTT
Locus tag: BPUM_2010
Name: hupA
Funciton: DNA-binding protein HU 1
hupA
DNA-binding protein HU 1

Position: -73
Score: 4.5
Sequence: AAGAACATTTGTTTCT
Locus tag: BPUM_2566
Name: dnaE
Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7)
Locus tag: BPUM_2565
Name: ytsJ
Funciton: NADP-dependent malic enzyme (EC 1.1.1.40)
dnaE
DNA polymerase III alpha subunit (EC 2.7.7.7)
ytsJ
NADP-dependent malic enzyme (EC 1.1.1.40)

Position: -75
Score: 4.4
Sequence: CAGAACAAACGTTCCT
Position: -46
Score: 4.8
Sequence: AAGAACGTTTGTTCGA
Locus tag: BPUM_2882
Name: BH1502
Funciton: Hypothetical protein
BH1502
Hypothetical protein

Position: -80
Score: 4.7
Sequence: AGAAACAAATGTTCTT
Locus tag: BPUM_2567
Name: ytrH
Funciton: Sporulation membrane protein
Locus tag: BPUM_2568
Name: ytrI
Funciton: Sporulation membrane protein
ytrH
Sporulation membrane protein
ytrI
Sporulation membrane protein

Position: -32
Score: 5.2
Sequence: TAGAACATAAGTTCGA
Locus tag: BPUM_0625
Name: pcrA
Funciton: ATP-dependent DNA helicase
Locus tag: BPUM_0626
Name: ligA
Funciton: NAD-dependent DNA ligase
Locus tag: BPUM_0627
Name: yerH
Funciton: Putative lipoprotein
pcrA
ATP-dependent DNA helicase
ligA
NAD-dependent DNA ligase
yerH
Putative lipoprotein

Position: -71
Score: 3.8
Sequence: TAGAACGTGCATTCGC
Locus tag: BPUM_0934
Name: yhaO
Funciton: DNA repair exonuclease family protein YhaO
Locus tag: BPUM_0935
Name: yhaN
Funciton: DNA double-strand break repair rad50 ATPase
Locus tag: BPUM_0936
Name: yhaM
Funciton: 3'-5' exoribonuclease yhaM (EC 3.1.-.-)
Locus tag: BPUM_0937
Name: yhaL
Funciton: Conserved hypothetical protein
yhaO
DNA repair exonuclease family protein YhaO
yhaN
DNA double-strand break repair rad50 ATPase
yhaM
3'-5' exoribonuclease yhaM (EC 3.1.-.-)
yhaL
Conserved hypothetical protein

Position: -115
Score: 4.2
Sequence: TCGAAGAGAGGTTCGT
Locus tag: BPUM_0993
Name: addB
Funciton: ATP-dependent deoxyribonuclease (subunit B)
Locus tag: BPUM_0994
Name: addA
Funciton: ATP-dependent deoxyribonuclease (subunit A)
Locus tag: BPUM_0995
Name: sbcD
Funciton: DNA repair exonuclease subunit D
Locus tag: BPUM_0996
Name: sbcC
Funciton: DNA repair exonuclease subunit C
Locus tag: BPUM_0997
Name: yisB
Funciton: Putative nuclease component
addB
ATP-dependent deoxyribonuclease (subunit B)
addA
ATP-dependent deoxyribonuclease (subunit A)
sbcD
DNA repair exonuclease subunit D
sbcC
DNA repair exonuclease subunit C
yisB
Putative nuclease component

Position: -128
Score: 4.6
Sequence: TAGAACACACGTTCTT
Locus tag: BPUM_0990
Name: yhjE
Funciton: Alkaline phosphatase like protein
yhjE
Alkaline phosphatase like protein
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